Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   PM3_RS06410 Genome accession   NZ_CP121788
Coordinates   1346952..1347386 (-) Length   144 a.a.
NCBI ID   WP_061406215.1    Uniprot ID   Q9LA12
Organism   Pasteurella multocida strain PM-3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1341952..1352386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PM3_RS06380 (PM3_1240) - 1342520..1342789 (-) 270 WP_005722568.1 GNAT family N-acetyltransferase -
  PM3_RS06385 (PM3_1241) yacG 1342789..1342992 (-) 204 WP_005722566.1 DNA gyrase inhibitor YacG -
  PM3_RS06390 (PM3_1242) coaE 1343003..1343623 (-) 621 WP_005722564.1 dephospho-CoA kinase -
  PM3_RS06395 (PM3_1243) - 1343638..1344360 (-) 723 WP_005722562.1 A24 family peptidase -
  PM3_RS06400 (PM3_1244) - 1344360..1345571 (-) 1212 WP_005722560.1 type II secretion system F family protein -
  PM3_RS06405 (PM3_1246) - 1345571..1346952 (-) 1382 Protein_1225 GspE/PulE family protein -
  PM3_RS06410 (PM3_1247) pilA 1346952..1347386 (-) 435 WP_061406215.1 prepilin peptidase-dependent pilin Machinery gene
  PM3_RS06415 (PM3_1248) ampD 1347546..1348112 (+) 567 WP_005719130.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  PM3_RS06420 (PM3_1249) rppH 1348698..1349294 (+) 597 WP_005722417.1 RNA pyrophosphohydrolase -
  PM3_RS06425 (PM3_1250) - 1349297..1350091 (+) 795 WP_005722415.1 sulfite exporter TauE/SafE family protein -
  PM3_RS06430 (PM3_1251) lgt 1350101..1350913 (+) 813 WP_135961479.1 prolipoprotein diacylglyceryl transferase -
  PM3_RS06435 (PM3_1252) - 1350910..1351761 (+) 852 WP_005722413.1 thymidylate synthase -
  PM3_RS06440 (PM3_1253) tadA 1351776..1352276 (+) 501 WP_005722410.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15213.68 Da        Isoelectric Point: 9.1215

>NTDB_id=814195 PM3_RS06410 WP_061406215.1 1346952..1347386(-) (pilA) [Pasteurella multocida strain PM-3]
MKKAIFFSIKKGFTLIELMIVIAIIAILATIAVPSYQNYTKKAAISELLQAAAPYRAEVELCIYNTNTPSECSAGQHGIR
ANISSGKKYLSSINVKSGVITVIGQKSLEGVNYTLSATGNAVDGVSWSVKCNGGSEVFPAGFCA

Nucleotide


Download         Length: 435 bp        

>NTDB_id=814195 PM3_RS06410 WP_061406215.1 1346952..1347386(-) (pilA) [Pasteurella multocida strain PM-3]
ATGAAAAAAGCCATTTTCTTTTCGATTAAAAAAGGGTTTACGCTAATTGAATTAATGATTGTCATTGCCATTATTGCGAT
TTTAGCCACGATTGCCGTGCCATCTTATCAAAATTATACAAAAAAAGCGGCAATCTCTGAATTATTGCAAGCCGCTGCTC
CTTATCGTGCCGAGGTAGAACTTTGTATCTATAATACAAATACGCCCAGTGAATGTAGTGCAGGACAGCATGGTATTAGA
GCAAATATAAGTTCTGGTAAAAAATATCTCAGCTCAATCAATGTCAAGTCTGGCGTGATTACTGTCATTGGTCAAAAAAG
CTTAGAGGGAGTCAATTACACTTTAAGCGCGACAGGAAATGCCGTTGATGGTGTTTCATGGAGTGTAAAATGTAATGGTG
GTAGTGAAGTTTTCCCAGCAGGATTTTGCGCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9LA12

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Haemophilus influenzae 86-028NP

59.028

100

0.59
  pilA Haemophilus influenzae Rd KW20

59.028

100

0.59
  pilA Glaesserella parasuis strain SC1401

53.02

100

0.549
  comP Acinetobacter baylyi ADP1

37.681

95.833

0.361