Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   QBJ73_RS07945 Genome accession   NZ_CP121776
Coordinates   1666334..1667467 (-) Length   377 a.a.
NCBI ID   WP_010325661.1    Uniprot ID   A0AAJ6IF41
Organism   Acinetobacter johnsonii strain AYTCM     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 1661334..1672467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBJ73_RS07915 (QBJ73_07920) - 1661543..1662133 (-) 591 WP_010325656.1 hypothetical protein -
  QBJ73_RS07920 (QBJ73_07925) - 1662268..1662642 (-) 375 WP_029574920.1 RcnB family protein -
  QBJ73_RS07925 (QBJ73_07930) - 1662840..1663385 (-) 546 WP_004984048.1 glutathione peroxidase -
  QBJ73_RS07930 (QBJ73_07935) - 1663509..1664063 (-) 555 WP_010325658.1 hypothetical protein -
  QBJ73_RS07935 (QBJ73_07940) - 1664399..1665319 (+) 921 WP_010325659.1 DMT family transporter -
  QBJ73_RS07940 (QBJ73_07945) - 1665719..1666288 (-) 570 WP_010325660.1 L-threonylcarbamoyladenylate synthase -
  QBJ73_RS07945 (QBJ73_07950) dprA 1666334..1667467 (-) 1134 WP_010325661.1 DNA-processing protein DprA Machinery gene
  QBJ73_RS07950 (QBJ73_07955) tsaP 1667490..1668644 (-) 1155 WP_010325662.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  QBJ73_RS07955 (QBJ73_07960) def 1668765..1669298 (+) 534 WP_004684452.1 peptide deformylase -
  QBJ73_RS07960 (QBJ73_07965) - 1669389..1669826 (+) 438 WP_010325663.1 DUF2946 family protein -
  QBJ73_RS07965 (QBJ73_07970) - 1669898..1671925 (+) 2028 WP_010325664.1 TonB-dependent copper receptor -

Sequence


Protein


Download         Length: 377 a.a.        Molecular weight: 41695.35 Da        Isoelectric Point: 6.7431

>NTDB_id=814166 QBJ73_RS07945 WP_010325661.1 1666334..1667467(-) (dprA) [Acinetobacter johnsonii strain AYTCM]
MLNSLSHEQIATITLWYLVQHSLSSFQKLQQHFGTSTKAVAASNHQIWPNLGLHKSHLQRVVEIQTPAGQIKLQTLLQDV
QASCDFILLDTESHYPSQLLPYADRPPILFGQGNPQSLLQPQVAIVGSRKPSPHGKQVAYDFAYYLAEKGFYICSGLAEG
IDAAAHQGGLKHQRTIAVMGTGLDLTYPSQHQTLRTQILENNGCIITEFLPQTPPLKRNFPRRNRIVSALSLGVVVAEAA
LKSGSLGTAKSAAEQGKTIFAIPGHIYSEHHQGCHQLIREGAILVDHPEQIIEDLALPTQWHSQSQSQETTPSASIEIPS
DLLELYNQLDWVGQNMDQLNFKLNIDIATLTSQLMELEILGLAQQQAGNYLRCRSNQ

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=814166 QBJ73_RS07945 WP_010325661.1 1666334..1667467(-) (dprA) [Acinetobacter johnsonii strain AYTCM]
ATGCTGAACTCTTTATCACATGAACAGATTGCAACAATCACCCTGTGGTATTTGGTTCAGCATTCTTTATCGAGCTTTCA
AAAACTACAGCAGCATTTTGGCACAAGCACAAAAGCTGTTGCTGCCTCCAATCATCAGATCTGGCCAAATCTCGGCTTAC
ACAAAAGTCATCTACAACGTGTCGTAGAAATTCAAACACCTGCTGGACAAATCAAATTACAAACTTTACTGCAGGACGTC
CAAGCCAGTTGTGATTTTATTTTGCTTGATACTGAAAGTCATTATCCCTCGCAGCTGCTGCCCTATGCTGACCGACCACC
GATTTTATTTGGTCAGGGCAATCCACAAAGTCTACTCCAGCCTCAAGTTGCTATCGTCGGCAGTCGAAAACCCAGTCCGC
ACGGCAAGCAAGTGGCTTATGACTTTGCTTATTATCTCGCCGAGAAAGGCTTTTATATTTGCAGTGGTTTAGCTGAAGGC
ATTGATGCTGCAGCACATCAGGGCGGATTAAAACATCAACGTACCATTGCGGTGATGGGCACGGGCTTAGATCTCACCTA
TCCTTCCCAACATCAAACACTGCGTACGCAAATATTAGAAAATAATGGCTGTATTATTACTGAGTTTTTACCTCAAACCC
CGCCTTTAAAACGTAATTTCCCACGGCGAAACCGCATCGTCAGTGCATTGAGTTTAGGAGTTGTGGTTGCAGAAGCCGCA
CTCAAAAGTGGCTCTCTTGGCACAGCCAAATCTGCTGCTGAACAAGGCAAGACGATTTTTGCGATTCCCGGTCATATTTA
CAGCGAACACCATCAAGGTTGTCATCAACTGATCCGAGAAGGGGCGATTTTGGTCGATCATCCTGAGCAAATCATTGAAG
ACTTGGCACTCCCCACTCAATGGCATAGCCAATCCCAGTCACAAGAAACCACCCCAAGTGCTAGTATTGAGATCCCATCT
GATTTACTCGAACTTTATAATCAACTGGATTGGGTTGGACAAAATATGGATCAACTTAATTTCAAACTTAACATCGATAT
TGCCACACTCACTAGCCAGTTAATGGAACTGGAGATTTTAGGACTCGCACAACAACAGGCTGGCAATTATCTGCGTTGCC
GTTCCAACCAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

66.755

99.735

0.666

  dprA Acinetobacter baumannii D1279779

65.691

99.735

0.655

  dprA Acinetobacter baylyi ADP1

60.63

100

0.613