Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   QBJ73_RS07950 Genome accession   NZ_CP121776
Coordinates   1667490..1668644 (-) Length   384 a.a.
NCBI ID   WP_010325662.1    Uniprot ID   A0AAJ6IGS3
Organism   Acinetobacter johnsonii strain AYTCM     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1662490..1673644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBJ73_RS07925 (QBJ73_07930) - 1662840..1663385 (-) 546 WP_004984048.1 glutathione peroxidase -
  QBJ73_RS07930 (QBJ73_07935) - 1663509..1664063 (-) 555 WP_010325658.1 hypothetical protein -
  QBJ73_RS07935 (QBJ73_07940) - 1664399..1665319 (+) 921 WP_010325659.1 DMT family transporter -
  QBJ73_RS07940 (QBJ73_07945) - 1665719..1666288 (-) 570 WP_010325660.1 L-threonylcarbamoyladenylate synthase -
  QBJ73_RS07945 (QBJ73_07950) dprA 1666334..1667467 (-) 1134 WP_010325661.1 DNA-processing protein DprA Machinery gene
  QBJ73_RS07950 (QBJ73_07955) tsaP 1667490..1668644 (-) 1155 WP_010325662.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  QBJ73_RS07955 (QBJ73_07960) def 1668765..1669298 (+) 534 WP_004684452.1 peptide deformylase -
  QBJ73_RS07960 (QBJ73_07965) - 1669389..1669826 (+) 438 WP_010325663.1 DUF2946 family protein -
  QBJ73_RS07965 (QBJ73_07970) - 1669898..1671925 (+) 2028 WP_010325664.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42340.25 Da        Isoelectric Point: 7.3934

>NTDB_id=814167 QBJ73_RS07950 WP_010325662.1 1667490..1668644(-) (tsaP) [Acinetobacter johnsonii strain AYTCM]
MKKVFMGMPSFSALGFKQHMLALAVCVSVGAGVTSTAQAAPTRNYNPPALKANAPNVYVVKKGDTLWDISKRFLNNPVRW
PEIWASNRHVKNPHWIFPGDRLLMCTYEGRPIIGKDEGDGCEGIIRRYTGGTKLQPQARVESLNNAIPVIPLEYIKNWLE
HSTILSEESLEGTPYIIGAADQRVIAGKGQTVYARGQGIEVGQRYAIYREGEPYIVTDAEGKKQNLGLELTQVGSAIAIR
GENDMSTLEITDSYNSEVRRGYRVLPEYDAMLPTLFYPTHAQDVTDGGQVIRVQGSIGLAAKHSVVTIDRGTVDGVQSGY
VFSVSQKGQEIRDPKTNEKLTLPTERIGNIMVFKTFDRVSYAYVLDSELPMNLGAKLSPSVVDE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=814167 QBJ73_RS07950 WP_010325662.1 1667490..1668644(-) (tsaP) [Acinetobacter johnsonii strain AYTCM]
ATGAAAAAGGTTTTTATGGGCATGCCATCTTTTAGTGCCTTGGGGTTTAAGCAACACATGTTAGCACTTGCGGTTTGCGT
AAGTGTTGGCGCTGGCGTCACTTCAACAGCTCAAGCTGCACCTACACGAAATTACAATCCTCCTGCTTTAAAAGCCAATG
CACCGAATGTTTATGTGGTGAAAAAAGGCGATACCCTGTGGGATATTTCTAAACGTTTCCTAAACAATCCTGTGCGTTGG
CCTGAAATTTGGGCTAGCAATAGACACGTCAAAAATCCGCATTGGATTTTCCCGGGTGATCGTTTATTGATGTGTACCTA
TGAAGGTCGTCCAATTATTGGTAAAGATGAAGGCGATGGCTGTGAAGGGATTATTCGTCGTTATACAGGCGGCACTAAAC
TTCAACCTCAAGCACGGGTTGAGTCTTTAAACAATGCTATTCCTGTCATTCCACTGGAATACATTAAAAACTGGCTTGAA
CACAGCACTATTCTTTCAGAGGAATCTTTGGAAGGTACACCGTATATCATTGGTGCTGCCGATCAGCGTGTGATTGCAGG
TAAAGGTCAAACCGTTTATGCACGTGGCCAAGGCATTGAAGTCGGTCAACGCTACGCGATTTACCGTGAAGGCGAACCGT
ACATTGTGACGGATGCAGAGGGTAAAAAACAAAATCTAGGTCTAGAATTGACTCAGGTTGGCTCAGCCATTGCCATTCGT
GGTGAAAATGATATGTCCACCTTAGAAATCACAGACTCGTATAATTCTGAAGTACGTCGTGGTTATCGCGTACTGCCTGA
ATACGACGCCATGCTTCCAACCTTGTTTTACCCAACACATGCACAAGATGTGACTGATGGTGGACAAGTGATTCGTGTTC
AAGGTTCGATTGGTCTAGCTGCGAAGCATTCAGTTGTAACCATTGACCGTGGCACAGTGGATGGCGTTCAATCGGGTTAT
GTATTCTCGGTTAGTCAAAAGGGTCAAGAAATTCGTGATCCGAAAACCAATGAAAAACTGACCCTTCCAACGGAGCGTAT
CGGCAACATCATGGTCTTTAAAACCTTTGATCGTGTCAGCTATGCTTATGTGCTCGACAGCGAACTACCAATGAACTTGG
GCGCGAAACTTTCTCCCTCTGTCGTGGATGAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

65.714

100

0.659