Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QBJ73_RS06945 Genome accession   NZ_CP121776
Coordinates   1418724..1419050 (+) Length   108 a.a.
NCBI ID   WP_308469584.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AYTCM     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1410899..1430478 1418724..1419050 within 0


Gene organization within MGE regions


Location: 1410899..1430478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBJ73_RS06895 (QBJ73_06900) - 1410899..1412131 (+) 1233 WP_308469651.1 tyrosine-type recombinase/integrase -
  QBJ73_RS06900 (QBJ73_06905) - 1412789..1413028 (+) 240 WP_130234852.1 AlpA family transcriptional regulator -
  QBJ73_RS06905 (QBJ73_06910) - 1413031..1413627 (+) 597 WP_308469577.1 hypothetical protein -
  QBJ73_RS06910 (QBJ73_06915) - 1413632..1413847 (+) 216 WP_178896167.1 helix-turn-helix domain-containing protein -
  QBJ73_RS06915 (QBJ73_06920) - 1413844..1414350 (+) 507 WP_308469578.1 BRO family protein -
  QBJ73_RS06920 (QBJ73_06925) - 1414343..1414711 (+) 369 WP_308469579.1 hypothetical protein -
  QBJ73_RS06925 (QBJ73_06930) - 1414722..1415429 (+) 708 WP_308469580.1 KilA-N domain-containing protein -
  QBJ73_RS06930 (QBJ73_06935) - 1415433..1415741 (+) 309 WP_308469581.1 hypothetical protein -
  QBJ73_RS06935 (QBJ73_06940) - 1415734..1416048 (+) 315 WP_308469582.1 hypothetical protein -
  QBJ73_RS06940 (QBJ73_06945) - 1416041..1418470 (+) 2430 WP_308469583.1 DUF927 domain-containing protein -
  QBJ73_RS06945 (QBJ73_06950) ssb 1418724..1419050 (+) 327 WP_308469584.1 single-stranded DNA-binding protein Machinery gene
  QBJ73_RS06950 (QBJ73_06955) - 1420242..1420748 (-) 507 WP_308469585.1 DUF4468 domain-containing protein -
  QBJ73_RS06955 (QBJ73_06960) - 1420835..1421104 (-) 270 WP_308469586.1 hypothetical protein -
  QBJ73_RS06960 (QBJ73_06965) - 1421107..1425186 (-) 4080 WP_308469587.1 tape measure protein -
  QBJ73_RS06965 (QBJ73_06970) - 1425187..1425552 (-) 366 WP_308469588.1 hypothetical protein -
  QBJ73_RS06970 (QBJ73_06975) - 1425859..1426608 (-) 750 WP_308469589.1 hypothetical protein -
  QBJ73_RS06975 (QBJ73_06980) - 1428781..1430478 (-) 1698 WP_371746430.1 NAD-dependent malic enzyme -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12244.92 Da        Isoelectric Point: 10.2744

>NTDB_id=814163 QBJ73_RS06945 WP_308469584.1 1418724..1419050(+) (ssb) [Acinetobacter johnsonii strain AYTCM]
MPNVNKVTVMGVLGRDPETKQFPNGGSITTFSVATTEFWKDKTTGERKEATEWHRIATSNRLAEIASKYLKKGGKVYIEG
SLRTRKWKDSKGTDREITEIRADELQLL

Nucleotide


Download         Length: 327 bp        

>NTDB_id=814163 QBJ73_RS06945 WP_308469584.1 1418724..1419050(+) (ssb) [Acinetobacter johnsonii strain AYTCM]
ATGCCAAACGTAAACAAAGTAACTGTGATGGGTGTATTAGGCCGTGACCCTGAAACTAAACAATTCCCAAACGGCGGCAG
CATTACAACATTCAGCGTTGCAACTACCGAGTTTTGGAAAGACAAGACCACAGGCGAGCGCAAAGAGGCCACAGAATGGC
ACAGAATCGCCACTAGCAACCGTTTAGCCGAGATTGCCAGTAAGTACCTCAAGAAAGGCGGAAAGGTTTATATCGAGGGC
AGCTTGCGTACAAGGAAGTGGAAAGACAGTAAAGGAACGGATCGGGAAATAACCGAGATTCGAGCCGATGAGCTGCAATT
GCTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

57.407

100

0.574
  ssb Vibrio cholerae strain A1552

54.639

89.815

0.491
  ssb Neisseria gonorrhoeae MS11

49.057

98.148

0.481
  ssb Neisseria meningitidis MC58

49.057

98.148

0.481