Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QBL01_RS07740 Genome accession   NZ_CP121769
Coordinates   1505084..1505626 (-) Length   180 a.a.
NCBI ID   WP_279378342.1    Uniprot ID   A0AAJ6ACV4
Organism   Glaesserella parasuis strain Z44     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1500084..1510626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBL01_RS07715 (QBL01_07715) argF 1500430..1501440 (-) 1011 WP_279378340.1 ornithine carbamoyltransferase -
  QBL01_RS07720 (QBL01_07720) - 1501589..1501867 (+) 279 WP_010786777.1 type II toxin-antitoxin system RelE/ParE family toxin -
  QBL01_RS07725 (QBL01_07725) - 1501878..1502150 (+) 273 WP_005712616.1 HigA family addiction module antitoxin -
  QBL01_RS07730 (QBL01_07730) rhlB 1502214..1503434 (+) 1221 WP_026916465.1 ATP-dependent RNA helicase RhlB -
  QBL01_RS07735 (QBL01_07735) - 1503444..1504931 (+) 1488 WP_279378341.1 helicase HerA-like domain-containing protein -
  QBL01_RS07740 (QBL01_07740) ssb 1505084..1505626 (-) 543 WP_279378342.1 single-stranded DNA-binding protein Machinery gene
  QBL01_RS07745 (QBL01_07745) uvrA 1505929..1508757 (+) 2829 WP_021116871.1 excinuclease ABC subunit UvrA -
  QBL01_RS07750 (QBL01_07750) - 1508842..1509222 (+) 381 WP_010786782.1 YacL family protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19968.81 Da        Isoelectric Point: 4.9833

>NTDB_id=814117 QBL01_RS07740 WP_279378342.1 1505084..1505626(-) (ssb) [Glaesserella parasuis strain Z44]
MAGVNKVIIVGNLGNDPDMRTMPNGDAVATLSVATSESWNDKMTGERREVTEWHRIVFFRRQAEVAGQYLRKGSKVYVEG
KLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRSSGGDFGGNQGSGWNQAPAQTNYNQGGYSDNYAQNNNFNGSNATRPQPA
QKPAAQAEPPMDNFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=814117 QBL01_RS07740 WP_279378342.1 1505084..1505626(-) (ssb) [Glaesserella parasuis strain Z44]
ATGGCAGGTGTAAATAAAGTAATTATTGTCGGCAATCTCGGTAATGACCCAGATATGCGTACAATGCCAAACGGCGATGC
GGTTGCAACATTAAGCGTAGCAACCAGTGAAAGTTGGAACGATAAAATGACAGGCGAACGCCGTGAGGTCACCGAATGGC
ACCGTATCGTTTTCTTCCGTCGTCAAGCAGAAGTAGCAGGACAATACTTACGCAAAGGTTCAAAAGTTTATGTAGAAGGC
AAGCTCAAAACACGCAAATGGCAAGATCAAAACGGTCAAGATCGTTACACCACAGAAATTCAAGGCGATGTACTACAAAT
GTTAGACAGCCGTAGCAGTGGCGGTGATTTTGGCGGAAATCAAGGTAGCGGTTGGAACCAAGCACCAGCGCAAACCAACT
ACAATCAAGGCGGCTACAGCGACAACTATGCTCAAAACAACAACTTCAATGGGAGCAACGCAACCAGACCGCAACCAGCC
CAAAAACCTGCGGCTCAAGCAGAACCACCAATGGATAATTTTGATGATGATATTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

99.444

100

0.994
  ssb Vibrio cholerae strain A1552

50.265

100

0.528
  ssb Neisseria gonorrhoeae MS11

44.505

100

0.45
  ssb Neisseria meningitidis MC58

43.956

100

0.444