Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QBK97_RS07795 Genome accession   NZ_CP121768
Coordinates   1621279..1622475 (+) Length   398 a.a.
NCBI ID   WP_196980197.1    Uniprot ID   -
Organism   Glaesserella parasuis strain d76     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1616279..1627475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBK97_RS07770 (QBK97_07770) gpt 1616435..1616914 (+) 480 WP_005714020.1 xanthine phosphoribosyltransferase -
  QBK97_RS07775 (QBK97_07775) gmk 1617152..1617778 (+) 627 WP_021113158.1 guanylate kinase -
  QBK97_RS07780 (QBK97_07780) radA 1617831..1619207 (-) 1377 WP_075606468.1 DNA repair protein RadA -
  QBK97_RS07785 (QBK97_07785) pilA 1619395..1619853 (+) 459 WP_021113149.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  QBK97_RS07790 (QBK97_07790) pilB 1619901..1621286 (+) 1386 WP_021113170.1 GspE/PulE family protein Machinery gene
  QBK97_RS07795 (QBK97_07795) pilC 1621279..1622475 (+) 1197 WP_196980197.1 type II secretion system F family protein Machinery gene
  QBK97_RS07800 (QBK97_07800) - 1622472..1623140 (+) 669 WP_261485622.1 prepilin peptidase -
  QBK97_RS07805 (QBK97_07805) dapE 1623223..1624356 (+) 1134 WP_160405114.1 succinyl-diaminopimelate desuccinylase -
  QBK97_RS07810 (QBK97_07810) clpX 1624430..1625680 (-) 1251 WP_021114518.1 ATP-dependent protease ATP-binding subunit ClpX -
  QBK97_RS07815 (QBK97_07815) clpP 1625687..1626268 (-) 582 WP_010787003.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  QBK97_RS07820 (QBK97_07820) - 1626369..1626758 (+) 390 WP_279368230.1 SufE family protein -

Sequence

Protein


Download         Length: 398 a.a.        Molecular weight: 45678.50 Da        Isoelectric Point: 10.0610

>NTDB_id=814087 QBK97_RS07795 WP_196980197.1 1621279..1622475(+) (pilC) [Glaesserella parasuis strain d76]
MNNIYEFQWKGRNRFGQKQTGRQLAESREVLEKLLQQKGYSQLRISRHFALPTAPKKEEINQFMQQLALLIQAKIPLKQS
LVMLLETCQNRTFYRWQQETIRLIEAGFALSVAFEKQGKYINPQEIQLIKMAETSGNLGLILTNIAQRREKSEKLAKKIK
KILFYPVFILAISITLSILLLLFIVPQFAELYGSKGKSLPLITEILFSLSNFLQHSILTLIILCVLCFLLIHILNKKTDL
IKRLKFIILSHIPILKGIIQYSRIIFFCQNSSLMLASHIRLDTVLHSFLANKSDDILLQRSLATTLTYLKQGYRLADSLD
PKLFPTDMLQMIAIGEQSGKLSPMLQQISDGYQQRLDYQIDILSQLLEPMLMVLMGIIVGTILVGLYLPIFDMGAMIE

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=814087 QBK97_RS07795 WP_196980197.1 1621279..1622475(+) (pilC) [Glaesserella parasuis strain d76]
ATGAATAACATTTATGAATTTCAATGGAAAGGACGCAACCGCTTTGGACAAAAGCAAACAGGGCGACAGCTTGCCGAAAG
CCGAGAAGTGCTAGAAAAACTCTTGCAACAAAAAGGCTATAGCCAGTTACGCATTAGCCGACATTTTGCCTTGCCGACGG
CACCGAAAAAGGAAGAAATAAATCAATTTATGCAACAGTTGGCATTATTAATTCAAGCAAAAATCCCCCTAAAACAGAGT
TTGGTAATGTTGCTGGAAACTTGCCAAAATCGCACCTTTTACCGTTGGCAACAAGAGACAATCCGCTTGATTGAAGCTGG
CTTTGCCTTATCCGTTGCCTTTGAAAAACAGGGGAAATATATCAATCCACAAGAGATCCAATTAATTAAAATGGCAGAAA
CAAGCGGTAATTTAGGGCTGATTTTAACCAATATTGCACAACGCCGTGAAAAATCGGAAAAATTAGCCAAGAAAATTAAA
AAAATTCTCTTTTATCCCGTCTTTATTTTAGCTATTTCAATCACACTCTCTATTTTATTATTACTTTTTATTGTGCCACA
ATTTGCAGAACTTTATGGCTCAAAAGGAAAATCATTACCTTTAATTACCGAAATACTCTTTAGCCTATCCAATTTTCTAC
AACACTCTATTTTAACGCTAATTATTTTATGTGTGTTATGTTTTCTATTAATTCATATTTTAAATAAAAAAACAGATCTT
ATTAAACGCCTAAAGTTTATTATATTAAGCCATATTCCTATTTTAAAAGGCATTATCCAGTATTCACGCATTATCTTTTT
TTGTCAAAATAGCAGTTTAATGCTGGCTTCACATATTCGTTTAGATACTGTACTTCATTCCTTTTTAGCCAATAAAAGTG
ATGATATTTTATTACAACGTTCTCTAGCAACTACACTAACTTATTTAAAACAAGGTTATCGTTTAGCCGACAGTTTAGAT
CCAAAACTCTTTCCTACGGATATGTTACAGATGATTGCCATTGGCGAGCAGAGCGGAAAATTATCGCCAATGTTGCAACA
AATCAGCGACGGTTATCAACAGCGGTTAGATTATCAAATTGATATACTTTCCCAATTATTAGAGCCGATGTTAATGGTGT
TAATGGGAATTATTGTAGGAACTATTTTAGTCGGGTTATATTTGCCGATTTTTGATATGGGAGCAATGATAGAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(63-186)

Type II secretion system (T2SS), protein F (T2SSF)

(267-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Glaesserella parasuis strain SC1401

98.744

100

0.987
  pilC Haemophilus influenzae 86-028NP

38.653

100

0.389
  pilC Haemophilus influenzae Rd KW20

38.653

100

0.389