Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | QBK97_RS07785 | Genome accession | NZ_CP121768 |
| Coordinates | 1619395..1619853 (+) | Length | 152 a.a. |
| NCBI ID | WP_021113149.1 | Uniprot ID | K4KA63 |
| Organism | Glaesserella parasuis strain d76 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1614395..1624853
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QBK97_RS07765 (QBK97_07765) | - | 1614801..1616255 (-) | 1455 | WP_021113191.1 | aminoacyl-histidine dipeptidase | - |
| QBK97_RS07770 (QBK97_07770) | gpt | 1616435..1616914 (+) | 480 | WP_005714020.1 | xanthine phosphoribosyltransferase | - |
| QBK97_RS07775 (QBK97_07775) | gmk | 1617152..1617778 (+) | 627 | WP_021113158.1 | guanylate kinase | - |
| QBK97_RS07780 (QBK97_07780) | radA | 1617831..1619207 (-) | 1377 | WP_075606468.1 | DNA repair protein RadA | - |
| QBK97_RS07785 (QBK97_07785) | pilA | 1619395..1619853 (+) | 459 | WP_021113149.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| QBK97_RS07790 (QBK97_07790) | pilB | 1619901..1621286 (+) | 1386 | WP_021113170.1 | GspE/PulE family protein | Machinery gene |
| QBK97_RS07795 (QBK97_07795) | pilC | 1621279..1622475 (+) | 1197 | WP_196980197.1 | type II secretion system F family protein | Machinery gene |
| QBK97_RS07800 (QBK97_07800) | - | 1622472..1623140 (+) | 669 | WP_261485622.1 | prepilin peptidase | - |
| QBK97_RS07805 (QBK97_07805) | dapE | 1623223..1624356 (+) | 1134 | WP_160405114.1 | succinyl-diaminopimelate desuccinylase | - |
Sequence
Protein
Download Length: 152 a.a. Molecular weight: 16069.59 Da Isoelectric Point: 9.3772
>NTDB_id=814085 QBK97_RS07785 WP_021113149.1 1619395..1619853(+) (pilA) [Glaesserella parasuis strain d76]
MKKIRLIRPLAKAFTLIELMIVIAIIAILATIAIPSYTSYTQKAALSELLSASASYKSDVEICIYNTRALTNCTGGSNGV
QANKTDVADAKYLKSISVAAGVITVAGKGNIDGYGYTMTPTLANNNITWTTSCRGSDTSLFPANFCGTKATQ
MKKIRLIRPLAKAFTLIELMIVIAIIAILATIAIPSYTSYTQKAALSELLSASASYKSDVEICIYNTRALTNCTGGSNGV
QANKTDVADAKYLKSISVAAGVITVAGKGNIDGYGYTMTPTLANNNITWTTSCRGSDTSLFPANFCGTKATQ
Nucleotide
Download Length: 459 bp
>NTDB_id=814085 QBK97_RS07785 WP_021113149.1 1619395..1619853(+) (pilA) [Glaesserella parasuis strain d76]
ATGAAAAAAATCAGGTTAATTCGACCGCTTGCAAAAGCCTTTACCTTAATTGAGTTGATGATCGTGATCGCCATCATTGC
TATTTTAGCCACGATTGCAATCCCGTCTTACACCAGTTACACCCAAAAGGCTGCACTCTCTGAGTTATTAAGTGCTTCCG
CATCTTATAAATCCGATGTGGAAATTTGTATTTATAACACAAGGGCTTTAACTAACTGTACAGGGGGTTCTAACGGCGTT
CAAGCCAATAAAACCGATGTTGCCGATGCTAAATATCTTAAATCTATTTCCGTCGCTGCAGGTGTAATCACAGTGGCTGG
TAAAGGCAACATTGATGGCTACGGCTACACAATGACCCCGACATTAGCCAATAACAACATCACTTGGACAACAAGCTGTC
GAGGTTCTGACACCAGTTTATTCCCTGCGAATTTCTGTGGGACAAAAGCCACACAATAA
ATGAAAAAAATCAGGTTAATTCGACCGCTTGCAAAAGCCTTTACCTTAATTGAGTTGATGATCGTGATCGCCATCATTGC
TATTTTAGCCACGATTGCAATCCCGTCTTACACCAGTTACACCCAAAAGGCTGCACTCTCTGAGTTATTAAGTGCTTCCG
CATCTTATAAATCCGATGTGGAAATTTGTATTTATAACACAAGGGCTTTAACTAACTGTACAGGGGGTTCTAACGGCGTT
CAAGCCAATAAAACCGATGTTGCCGATGCTAAATATCTTAAATCTATTTCCGTCGCTGCAGGTGTAATCACAGTGGCTGG
TAAAGGCAACATTGATGGCTACGGCTACACAATGACCCCGACATTAGCCAATAACAACATCACTTGGACAACAAGCTGTC
GAGGTTCTGACACCAGTTTATTCCCTGCGAATTTCTGTGGGACAAAAGCCACACAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Glaesserella parasuis strain SC1401 |
84.967 |
100 |
0.855 |
| pilA | Haemophilus influenzae 86-028NP |
58.784 |
97.368 |
0.572 |
| pilA | Haemophilus influenzae Rd KW20 |
56.757 |
97.368 |
0.553 |
| comP | Acinetobacter baylyi ADP1 |
44.828 |
95.395 |
0.428 |
| pilE | Neisseria gonorrhoeae MS11 |
36.424 |
99.342 |
0.362 |