Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   QBE03_RS16745 Genome accession   NZ_CP121698
Coordinates   3901013..3902071 (-) Length   352 a.a.
NCBI ID   WP_017908825.1    Uniprot ID   A0A0J6FVA6
Organism   Xanthomonas sacchari strain DJ16     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3896013..3907071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBE03_RS16725 - 3897099..3898994 (-) 1896 WP_267092737.1 type IV pilus secretin PilQ family protein -
  QBE03_RS16730 - 3899015..3899554 (-) 540 WP_279361408.1 pilus assembly protein PilP -
  QBE03_RS16735 - 3899551..3900225 (-) 675 WP_017914107.1 type 4a pilus biogenesis protein PilO -
  QBE03_RS16740 - 3900222..3901013 (-) 792 WP_148830005.1 PilN domain-containing protein -
  QBE03_RS16745 pilM 3901013..3902071 (-) 1059 WP_017908825.1 pilus assembly protein PilM Machinery gene
  QBE03_RS16750 - 3902290..3904716 (+) 2427 WP_148830004.1 penicillin-binding protein 1A -
  QBE03_RS16755 - 3904870..3905514 (+) 645 WP_017909856.1 hypothetical protein -
  QBE03_RS16760 - 3905686..3906975 (-) 1290 WP_026143410.1 citrate synthase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37696.33 Da        Isoelectric Point: 4.4501

>NTDB_id=814009 QBE03_RS16745 WP_017908825.1 3901013..3902071(-) (pilM) [Xanthomonas sacchari strain DJ16]
MGLIPKSQQPLIGIDISSTAVKLLQLSRNGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAVTRSGTRAKHAAAA
VAGSAVITKVIPMPAELDESELEAQVELEAVNYIPYPIDEVNLDFEVLGVIPNNPEMVQVLLAASRSENVELRQSALELG
GLVAKVMDVEAFAVENAFALVASELPVAADGIVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGMAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDHIVLAGGCAALAGLPEMVEEQLGVATVVANPLA
QMTLGPKVQAHALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=814009 QBE03_RS16745 WP_017908825.1 3901013..3902071(-) (pilM) [Xanthomonas sacchari strain DJ16]
GTGGGGCTTATCCCAAAGAGTCAGCAGCCGCTGATCGGCATCGACATCAGCTCGACCGCGGTCAAGCTGCTGCAGCTTTC
GCGTAACGGCAACCGGTTCCGGGTCGAGCATTACGCCGTCGAACCCTTGCCGCCCAATGCCGTGGTCGAGAAGAACATCG
TCGAGGTCGAGGCGGTGGGCGAGGCGATCCGCCGCGCCGTGACCCGTTCCGGTACCCGCGCCAAGCATGCCGCGGCCGCC
GTGGCCGGTTCGGCGGTGATCACCAAGGTGATCCCGATGCCGGCCGAGCTGGACGAGAGCGAGCTGGAAGCCCAGGTCGA
GTTGGAGGCGGTGAACTACATCCCGTACCCGATCGACGAAGTGAACCTGGATTTCGAGGTGCTGGGCGTCATCCCCAACA
ACCCCGAGATGGTGCAGGTGCTGCTGGCCGCCTCGCGCTCGGAGAACGTGGAACTGCGCCAGTCGGCCCTGGAGCTGGGC
GGGCTGGTGGCCAAGGTGATGGACGTGGAGGCCTTCGCGGTCGAGAACGCCTTCGCGCTGGTGGCCAGCGAGCTGCCGGT
GGCCGCCGACGGCATCGTCGCCCTGGTCGACATCGGCGCCACCATGACCACCCTCAATGTCCTGCGTGGCGGGCGCAGCC
TGTACAGCCGCGAGCAGGTGTTCGGCGGCAAGCAGCTGACCGACGAAGTGATGCGCCGCTACGGCCTGACCTACGAGGAA
GCCGGCATGGCCAAGCGCCAGGGCGGGCTGCCGGAAAGCTACGAGGTCGAGGTGCTGGAGCCGTTCAAGGAAGCCACGGT
GCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTATGCCGGCAGCGAATTCAACCGCGTCGACCACATCGTCCTGGCCGGGG
GCTGCGCGGCCCTGGCCGGGCTGCCGGAGATGGTGGAGGAGCAACTGGGCGTGGCCACGGTGGTCGCCAACCCGTTGGCG
CAGATGACCCTGGGGCCGAAGGTGCAGGCGCATGCGCTGGCCCAGGACGCGCCGGCGCTGATGATCGCCACCGGCCTGGC
GCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J6FVA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.42

100

0.514
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  comM Acinetobacter baylyi ADP1

49.716

100

0.497
  pilM Legionella pneumophila strain ERS1305867

47.714

99.432

0.474