Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QBE03_RS14890 Genome accession   NZ_CP121698
Coordinates   3436447..3436974 (-) Length   175 a.a.
NCBI ID   WP_048489408.1    Uniprot ID   A0A0J6G4U8
Organism   Xanthomonas sacchari strain DJ16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3431447..3441974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBE03_RS14880 - 3433155..3434051 (-) 897 WP_279361172.1 TIM barrel protein -
  QBE03_RS14885 - 3434541..3436322 (-) 1782 WP_279361173.1 AAA family ATPase -
  QBE03_RS14890 ssb 3436447..3436974 (-) 528 WP_048489408.1 single-stranded DNA-binding protein Machinery gene
  QBE03_RS14895 - 3437256..3438254 (+) 999 WP_150411084.1 polyprenyl synthetase family protein -
  QBE03_RS14900 - 3438268..3438531 (+) 264 WP_267086589.1 helix-hairpin-helix domain-containing protein -
  QBE03_RS14905 - 3438738..3439541 (-) 804 WP_150410860.1 dienelactone hydrolase family protein -
  QBE03_RS14910 murD 3439750..3441186 (-) 1437 WP_279361174.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18720.64 Da        Isoelectric Point: 5.3243

>NTDB_id=814007 QBE03_RS14890 WP_048489408.1 3436447..3436974(-) (ssb) [Xanthomonas sacchari strain DJ16]
MARGINKVILVGNLGNDPDTKYTQAGMAITRISLATTSVRKDRDGNQQERTEWHRVVFFGKLGEIAGEYLRKGSSVYVEG
SIRYDKYTGQDGVEKYSTDIVADEMQMLGGRGEGGGGGMGGGDRPQRSAPPRQERSGMGGGGGGGGGQDYAPRRQQPAPQ
QSAPMDDFADDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=814007 QBE03_RS14890 WP_048489408.1 3436447..3436974(-) (ssb) [Xanthomonas sacchari strain DJ16]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCCATCACCCGCATCAGCCTGGCCACCACCAGCGTGCGCAAGGACCGCGACGGCAACCAGCAGGAACGCACCGAGTGGC
ATCGCGTGGTGTTTTTCGGAAAGCTCGGTGAGATCGCCGGCGAGTACCTGCGCAAGGGCAGCTCGGTCTACGTCGAAGGC
TCGATCCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAGAAGTACTCCACCGACATCGTCGCCGACGAGATGCAGAT
GCTCGGCGGCCGCGGCGAGGGCGGTGGCGGCGGCATGGGCGGCGGCGACCGTCCGCAGCGCTCGGCGCCGCCGCGCCAGG
AGCGCTCCGGCATGGGCGGTGGTGGCGGTGGTGGCGGCGGGCAGGATTACGCGCCGCGCCGGCAGCAGCCGGCCCCGCAG
CAGTCCGCACCGATGGACGACTTCGCGGACGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J6G4U8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

44.211

100

0.48
  ssb Glaesserella parasuis strain SC1401

44.809

100

0.469
  ssb Neisseria meningitidis MC58

45.455

100

0.457
  ssb Neisseria gonorrhoeae MS11

45.455

100

0.457