Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   P9989_RS21310 Genome accession   NZ_CP121671
Coordinates   4195644..4196129 (-) Length   161 a.a.
NCBI ID   WP_283076830.1    Uniprot ID   -
Organism   Halobacillus naozhouensis strain KCTC 13234     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4190644..4201129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P9989_RS21290 (P9989_21285) - 4191767..4193437 (+) 1671 WP_346274880.1 peptide ABC transporter substrate-binding protein -
  P9989_RS21295 (P9989_21290) hmpA 4193487..4194707 (-) 1221 WP_283076828.1 NO-inducible flavohemoprotein -
  P9989_RS21300 (P9989_21295) - 4194893..4195330 (+) 438 WP_283076829.1 Rrf2 family transcriptional regulator -
  P9989_RS21305 (P9989_21300) rpsR 4195394..4195621 (-) 228 WP_163527903.1 30S ribosomal protein S18 -
  P9989_RS21310 (P9989_21305) ssbA 4195644..4196129 (-) 486 WP_283076830.1 single-stranded DNA-binding protein Machinery gene
  P9989_RS21315 (P9989_21310) rpsF 4196142..4196432 (-) 291 WP_283076831.1 30S ribosomal protein S6 -
  P9989_RS21320 (P9989_21315) ychF 4196578..4197675 (-) 1098 WP_283076832.1 redox-regulated ATPase YchF -
  P9989_RS21325 (P9989_21320) - 4197902..4198099 (-) 198 WP_283076833.1 DUF951 domain-containing protein -
  P9989_RS21330 (P9989_21325) - 4198125..4199009 (-) 885 WP_283076834.1 mechanosensitive ion channel family protein -
  P9989_RS21335 (P9989_21330) - 4199065..4200081 (-) 1017 WP_283076835.1 hypothetical protein -
  P9989_RS21340 (P9989_21335) yyaC 4200233..4200781 (+) 549 WP_283079017.1 spore protease YyaC -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17570.18 Da        Isoelectric Point: 4.4707

>NTDB_id=813856 P9989_RS21310 WP_283076830.1 4195644..4196129(-) (ssbA) [Halobacillus naozhouensis strain KCTC 13234]
MLNRVVLVGRLTKDPDLRYTPNGVAVANFTVAVNRPFSNNQGDRDADFINCVVWRRAAENLANFMSKGSLIGVDGRLQSR
SFDNQEGKRVFVTEVVADSVQFLESKGASQGGGGQQGSGFQPNQNQQQQGNNFGSNNNKKDDDPFADNGEPIDISDDDLP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=813856 P9989_RS21310 WP_283076830.1 4195644..4196129(-) (ssbA) [Halobacillus naozhouensis strain KCTC 13234]
ATGTTAAATCGTGTCGTTTTAGTCGGCAGATTAACGAAGGATCCGGATTTACGCTATACGCCAAATGGGGTGGCTGTTGC
CAACTTCACTGTTGCAGTGAATCGGCCATTTTCAAATAACCAGGGTGATCGTGATGCAGACTTCATTAACTGTGTTGTTT
GGAGACGAGCTGCTGAAAACCTTGCCAACTTTATGAGCAAAGGCAGTCTTATCGGTGTGGACGGGCGTTTGCAGTCCCGA
AGCTTCGATAATCAAGAAGGTAAGCGTGTGTTTGTAACAGAAGTTGTTGCAGACAGCGTACAGTTCCTAGAATCTAAGGG
TGCATCCCAGGGTGGAGGCGGCCAACAAGGTTCAGGATTCCAGCCAAATCAGAATCAACAACAACAAGGAAATAACTTCG
GTTCCAATAATAATAAAAAAGATGACGATCCTTTCGCCGATAATGGTGAACCGATCGACATCTCAGATGATGATTTACCA
TTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.453

100

0.683
  ssb Latilactobacillus sakei subsp. sakei 23K

58.14

100

0.621
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

65.839

0.391
  ssb Glaesserella parasuis strain SC1401

35.028

100

0.385