Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QA712_RS07220 Genome accession   NZ_CP121539
Coordinates   1330103..1330603 (-) Length   166 a.a.
NCBI ID   WP_003131953.1    Uniprot ID   -
Organism   Lactococcus lactis strain MA5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1325103..1335603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA712_RS07195 (QA712_07190) gnd 1326335..1327240 (-) 906 WP_332529457.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  QA712_RS07200 (QA712_07195) - 1327433..1328281 (+) 849 WP_021463449.1 MurR/RpiR family transcriptional regulator -
  QA712_RS07205 (QA712_07200) - 1328319..1328627 (+) 309 WP_047207001.1 DUF960 domain-containing protein -
  QA712_RS07210 (QA712_07205) - 1328710..1329483 (-) 774 WP_332529445.1 metallophosphoesterase -
  QA712_RS07215 (QA712_07210) rpsR 1329683..1329928 (-) 246 WP_003131952.1 30S ribosomal protein S18 -
  QA712_RS07220 (QA712_07215) ssb 1330103..1330603 (-) 501 WP_003131953.1 single-stranded DNA-binding protein Machinery gene
  QA712_RS07225 (QA712_07220) rpsF 1330633..1330926 (-) 294 WP_003131954.1 30S ribosomal protein S6 -
  QA712_RS07230 (QA712_07225) - 1331118..1331972 (-) 855 WP_012898664.1 undecaprenyl-diphosphate phosphatase -
  QA712_RS07235 (QA712_07230) - 1332495..1333961 (+) 1467 WP_162523649.1 amino acid permease -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18304.13 Da        Isoelectric Point: 5.2279

>NTDB_id=812877 QA712_RS07220 WP_003131953.1 1330103..1330603(-) (ssb) [Lactococcus lactis strain MA5]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=812877 QA712_RS07220 WP_003131953.1 1330103..1330603(-) (ssb) [Lactococcus lactis strain MA5]
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCGCCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.465

100

0.627
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.803

100

0.602
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.855

0.373
  ssb Glaesserella parasuis strain SC1401

35.028

100

0.373