Detailed information NTG0812754

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: RUU60_RS09635
• Genome accession: NZ_CP136025
• Coordinates: 1994631..1995641 (+)
• Length: 336 a.a.
• NCBI ID: WP_000568514.1
• Uniprot ID: -
• Organism: Escherichia coli strain GDSC2BY4G
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1989631..2000641

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RUU60_RS09605 (RUU60_09605)	nudB	1991354..1991806 (+)	453	WP_001300367.1	dihydroneopterin triphosphate diphosphatase	-
RUU60_RS09610 (RUU60_09610)	yebC	1991835..1992575 (+)	741	WP_000907248.1	YebC/PmpR family DNA-binding transcriptional regulator	-
RUU60_RS09615 (RUU60_09615)	ruvC	1992610..1993131 (+)	522	WP_001295503.1	crossover junction endodeoxyribonuclease RuvC	-
RUU60_RS09620 (RUU60_09620)	yebB	1993133..1993735 (-)	603	WP_001024924.1	YebB family permuted papain-like enzyme	-
RUU60_RS09625 (RUU60_09625)	yobI	1993807..1993872 (+)	66	WP_072094247.1	stress response small protein YobI	-
RUU60_RS09630 (RUU60_09630)	ruvA	1994011..1994622 (+)	612	WP_000580327.1	Holliday junction branch migration protein RuvA	-
RUU60_RS09635 (RUU60_09635)	ruvB	1994631..1995641 (+)	1011	WP_000568514.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
RUU60_RS09640 (RUU60_09640)	znuB	1995788..1996573 (-)	786	WP_000571479.1	zinc ABC transporter permease subunit ZnuB	-
RUU60_RS09645 (RUU60_09645)	znuC	1996570..1997325 (-)	756	WP_000202980.1	zinc ABC transporter ATP-binding protein ZnuC	-
RUU60_RS09650 (RUU60_09650)	znuA	1997404..1998336 (+)	933	WP_001342995.1	zinc ABC transporter substrate-binding protein ZnuA	-
RUU60_RS09655 (RUU60_09655)	mepM	1998352..1999674 (+)	1323	WP_001184045.1	murein DD-endopeptidase MepM	-

Sequence

Protein

• Length: 336 a.a.
• Molecular weight: 37187.80 Da
• Isoelectric Point: 4.7818

>NTDB_id=812754 RUU60_RS09635 WP_000568514.1 1994631..1995641(+) (ruvB) [Escherichia coli strain GDSC2BY4G]
MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG
VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEIARRARGTPRIANRLLRRVRDFAEVKHDG
TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA
TTRAWNHFGITPPEMP

Nucleotide

• Length: 1011 bp

>NTDB_id=812754 RUU60_RS09635 WP_000568514.1 1994631..1995641(+) (ruvB) [Escherichia coli strain GDSC2BY4G]
ATGATTGAAGCAGACCGTCTGATTTCTGCCGGTACCACTTTGCCGGAAGATGTAGCAGATCGCGCCATTCGCCCTAAATT
ACTGGAAGAGTATGTTGGTCAGCCGCAGGTTCGTTCACAGATGGAGATTTTCATCAAAGCAGCGAAACTGCGCGGCGATG
CCCTCGATCATTTGTTGATTTTTGGTCCTCCGGGGTTGGGTAAAACTACGCTTGCCAACATTGTCGCCAATGAAATGGGC
GTTAATTTACGCACGACTTCTGGTCCGGTGCTGGAAAAGGCGGGCGATCTGGCAGCGATGCTCACTAACCTTGAACCGCA
TGACGTGCTGTTTATTGATGAGATCCACCGTTTATCGCCAGTTGTTGAAGAAGTGCTGTACCCGGCAATGGAAGACTACC
AACTGGATATCATGATTGGTGAAGGTCCGGCGGCACGCTCCATTAAAATTGATTTGCCGCCGTTTACCCTGATTGGTGCA
ACCACGCGCGCAGGTTCGCTGACATCACCGTTGCGCGACCGTTTTGGTATTGTGCAACGTCTGGAGTTTTATCAGGTGCC
GGATCTGCAATATATCGTCAGTCGCAGCGCACGCTTTATGGGGCTTGAGATGAGTGATGACGGCGCGCTGGAAATTGCTC
GTCGCGCTCGCGGTACGCCGCGCATTGCCAACCGTCTGCTGCGTCGAGTGCGTGATTTCGCCGAAGTGAAGCACGATGGC
ACCATCTCGGCAGATATCGCTGCTCAGGCGTTGGATATGTTGAATGTCGATGCTGAAGGTTTCGATTATATGGACCGCAA
ATTGTTGCTGGCGGTAATCGATAAGTTCTTTGGTGGGCCGGTAGGTCTGGATAACCTGGCGGCAGCCATTGGCGAAGAAC
GTGAAACCATTGAAGATGTACTGGAACCTTATTTGATTCAGCAAGGCTTTTTGCAGCGTACACCGCGCGGGCGTATGGCG
ACGACGCGGGCGTGGAATCACTTTGGCATAACGCCGCCAGAAATGCCGTAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (23-181)

• RuvB AAA lid domain (AAA_lid_4) (184-257)

• RuvB C-terminal winged helix domain (WHD_RuvB) (259-328)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	60.79	97.917	0.595
ruvB	Streptococcus pneumoniae TIGR4	58.934	94.94	0.56
ruvB	Streptococcus pneumoniae R6	58.934	94.94	0.56
ruvB	Streptococcus pneumoniae D39	58.934	94.94	0.56
ruvB	Synechocystis sp. PCC 6803	53.56	96.131	0.515
ruvB	Helicobacter pylori 26695	52.351	94.94	0.497