Detailed information NTG0081275

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: KI220_RS04550
• Genome accession: NZ_AP023088
• Coordinates: 923846..924958 (+)
• Length: 370 a.a.
• NCBI ID: WP_003178089.1
• Uniprot ID: A0A415J9T0
• Organism: Bacillus paralicheniformis strain RSC-1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 918846..929958

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KI220_RS04525 (RSC1_00914)	rnpA	919574..919933 (-)	360	WP_020453656.1	ribonuclease P protein component	-
KI220_RS04530 (RSC1_00915)	rpmH	920018..920152 (-)	135	WP_003178075.1	50S ribosomal protein L34	-
KI220_RS04535 (RSC1_00916)	dnaA	920793..922133 (+)	1341	WP_023856797.1	chromosomal replication initiator protein DnaA	-
KI220_RS04540 (RSC1_00917)	dnaN	922311..923447 (+)	1137	WP_023856796.1	DNA polymerase III subunit beta	-
KI220_RS04545 (RSC1_00919)	yaaA	923614..923829 (+)	216	WP_003178084.1	S4 domain-containing protein YaaA	-
KI220_RS04550 (RSC1_00920)	recF	923846..924958 (+)	1113	WP_003178089.1	DNA replication/repair protein RecF	Machinery gene
KI220_RS04555 (RSC1_00921)	-	924976..925218 (+)	243	WP_023856795.1	extracellular matrix/biofilm biosynthesis regulator RemA family protein	-
KI220_RS04560 (RSC1_00922)	gyrB	925279..927192 (+)	1914	WP_031305110.1	DNA topoisomerase (ATP-hydrolyzing) subunit B	-
KI220_RS04565 (RSC1_00923)	gyrA	927384..929852 (+)	2469	WP_023856793.1	DNA gyrase subunit A	-

Sequence

Protein

• Length: 370 a.a.
• Molecular weight: 42482.33 Da
• Isoelectric Point: 6.7331

>NTDB_id=81275 KI220_RS04550 WP_003178089.1 923846..924958(+) (recF) [Bacillus paralicheniformis strain RSC-1]
MYIQNLTLSSYRNYERLDLQFENKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGS
VPIQLVISKKGKKGKVNHIEQQKLSQYVGAVNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDQTMLDVLTEQLTEFAAKVVMKRLQFVDQLEKWAQPIHSGISRGLEELTLKYHTSLHVSDSPDLSKM
INSYQETFSKLRDKEIERGVSLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIQEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHKTLNEAEIFRVENGTLSD

Nucleotide

• Length: 1113 bp

>NTDB_id=81275 KI220_RS04550 WP_003178089.1 923846..924958(+) (recF) [Bacillus paralicheniformis strain RSC-1]
TTGTATATCCAAAATCTTACATTATCATCTTACCGTAATTATGAGCGCCTTGACCTTCAATTTGAGAACAAAGTGAATGT
GATTATCGGAGAGAACGCTCAAGGAAAAACGAATTTGATGGAAGCGATCTATGTGCTTGCGATGGCGAAATCCCATCGGA
CGTCAAATGATAAAGAACTCATACGATGGGATGAAGACTATGCTAAAATAGAAGGCAGGGTCATTAAAAAAAACGGTTCT
GTTCCCATTCAGCTCGTGATTTCCAAAAAAGGAAAAAAAGGTAAAGTCAATCATATTGAACAGCAGAAGCTGAGCCAGTA
TGTCGGGGCTGTCAACACGATTATGTTCGCGCCGGAGGATTTAAATCTTGTAAAAGGAAGTCCTCAGGTCAGAAGAAGGT
TTCTCGATATGGAAATCGGCCAAGTATCACCTGTCTATCTTCATGACCTTTCTCTTTACCAAAAAATCCTTTCACAACGG
AATCATTTCCTGAAACAGCTTCAAACGAGAAAGCAAACCGACCAAACGATGCTTGACGTGCTGACGGAACAGCTTACGGA
ATTCGCGGCAAAGGTTGTGATGAAACGGCTTCAGTTTGTCGATCAGCTTGAAAAATGGGCTCAGCCCATTCATTCCGGAA
TTTCAAGAGGTCTGGAAGAGCTGACGTTAAAGTATCATACGTCTCTTCACGTATCAGATTCGCCCGATTTGTCGAAAATG
ATCAATAGTTATCAAGAAACGTTTTCTAAATTAAGAGATAAAGAAATAGAACGGGGGGTATCTCTGTCAGGTCCCCACAG
GGATGATGTTCTCTTCTACGTCAATGGCCGTGATGTGCAGACTTACGGATCGCAGGGCCAGCAGCGAACGACTGCTTTGT
CGCTTAAATTGGCTGAAATCGATTTGATTCAGGAAGAGATAGGAGAATATCCGATTCTGCTTTTGGATGATGTTTTATCA
GAGCTGGACGACTATCGGCAGTCTCACTTGCTCCACACCATTCAAGGCCGTGTTCAAACATTCGTAACAACGACAAGCGT
TGATGGAATTGATCATAAAACCTTAAACGAAGCGGAAATCTTTCGAGTTGAAAATGGCACGCTATCGGACTGA

Domains

Predicted by InterproScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (2-346)

3D structure

• AlphaFold DB: A0A415J9T0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Bacillus subtilis subsp. subtilis str. 168	89.13	99.459	0.886