Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   RTE58_RS09805 Genome accession   NZ_CP135959
Coordinates   2057167..2058177 (+) Length   336 a.a.
NCBI ID   WP_000568519.1    Uniprot ID   Q32HA1
Organism   Escherichia coli strain MS1266     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2052167..2063177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RTE58_RS09775 (RTE58_09775) nudB 2053890..2054342 (+) 453 WP_077393227.1 dihydroneopterin triphosphate diphosphatase -
  RTE58_RS09780 (RTE58_09780) yebC 2054371..2055111 (+) 741 WP_000907234.1 YebC/PmpR family DNA-binding transcriptional regulator -
  RTE58_RS09785 (RTE58_09785) ruvC 2055146..2055667 (+) 522 WP_001295503.1 crossover junction endodeoxyribonuclease RuvC -
  RTE58_RS09790 (RTE58_09790) yebB 2055669..2056271 (-) 603 WP_001024946.1 YebB family permuted papain-like enzyme -
  RTE58_RS09795 (RTE58_09795) yobI 2056343..2056408 (+) 66 WP_072123646.1 stress response small protein YobI -
  RTE58_RS09800 (RTE58_09800) ruvA 2056547..2057158 (+) 612 WP_000580323.1 Holliday junction branch migration protein RuvA -
  RTE58_RS09805 (RTE58_09805) ruvB 2057167..2058177 (+) 1011 WP_000568519.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  RTE58_RS09810 (RTE58_09810) znuB 2058329..2059114 (-) 786 WP_024009093.1 zinc ABC transporter permease subunit ZnuB -
  RTE58_RS09815 (RTE58_09815) znuC 2059111..2059866 (-) 756 WP_000202996.1 zinc ABC transporter ATP-binding protein ZnuC -
  RTE58_RS09820 (RTE58_09820) znuA 2059945..2060877 (+) 933 WP_027662346.1 zinc ABC transporter substrate-binding protein ZnuA -
  RTE58_RS09825 (RTE58_09825) mepM 2060893..2062215 (+) 1323 WP_001184045.1 murein DD-endopeptidase MepM -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37173.77 Da        Isoelectric Point: 4.7818

>NTDB_id=812486 RTE58_RS09805 WP_000568519.1 2057167..2058177(+) (ruvB) [Escherichia coli strain MS1266]
MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG
VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG
TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA
TTRAWNHFGITPPEMP

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=812486 RTE58_RS09805 WP_000568519.1 2057167..2058177(+) (ruvB) [Escherichia coli strain MS1266]
ATGATTGAAGCAGACCGTCTGATTTCTGCCGGTACCACTTTGCCGGAAGATGTGGCAGATCGCGCCATCCGCCCTAAATT
ACTGGAAGAGTATGTTGGTCAGCCGCAGGTTCGTTCGCAGATGGAGATTTTCATCAAAGCAGCGAAACTGCGCGGCGATG
CCCTCGATCATCTATTGATTTTTGGTCCTCCGGGGTTGGGTAAAACTACGCTTGCCAATATTGTCGCCAATGAAATGGGC
GTTAATTTACGCACGACTTCTGGTCCGGTGCTGGAAAAGGCGGGCGATCTGGCAGCAATGCTCACTAACCTTGAACCACA
CGATGTACTGTTTATTGATGAGATCCACCGTCTTTCACCAGTGGTGGAAGAGGTGTTGTATCCGGCAATGGAAGATTACC
AACTGGATATCATGATTGGTGAAGGTCCGGCGGCACGCTCCATTAAAATTGATTTGCCGCCGTTTACCCTGATTGGTGCA
ACCACGCGCGCAGGTTCGCTGACATCACCGTTGCGCGATCGTTTTGGTATTGTGCAACGTCTGGAGTTTTATCAGGTGCC
GGATCTGCAATATATCGTCAGTCGCAGCGCACGCTTTATGGGGCTTGAGATGAGTGATGACGGCGCGCTGGAAGTTGCTC
GTCGTGCGCGCGGTACGCCACGTATTGCCAACCGTCTGCTGCGTCGAGTGCGTGATTTCGCCGAAGTGAAGCACGATGGC
ACCATCTCGGCAGATATCGCTGCTCAGGCGCTGGATATGTTGAATGTCGATGCTGAAGGTTTCGATTATATGGACCGCAA
ATTGTTGCTGGCGGTAATCGATAAGTTCTTTGGTGGGCCGGTAGGTCTGGATAACCTGGCGGCAGCCATTGGCGAAGAAC
GTGAAACCATTGAGGATGTACTGGAACCTTATTTGATTCAGCAAGGCTTTTTGCAGCGTACACCGCGTGGGCGTATGGCG
ACGACGCGGGCGTGGAATCACTTTGGCATAACGCCGCCAGAAATGCCGTAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)

RuvB AAA lid domain (AAA_lid_4)

(184-257)

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HA1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

60.486

97.917

0.592
  ruvB Streptococcus pneumoniae TIGR4

58.934

94.94

0.56
  ruvB Streptococcus pneumoniae R6

58.934

94.94

0.56
  ruvB Streptococcus pneumoniae D39

58.934

94.94

0.56
  ruvB Synechocystis sp. PCC 6803

53.251

96.131

0.512
  ruvB Helicobacter pylori 26695

52.038

94.94

0.494