Detailed information NTG0812378

Bioinformatically predicted

Overview

• Name: comGA
• Type: Machinery gene
• Locus tag: QA587_RS02390
• Genome accession: NZ_CP121477
• Coordinates: 467868..468842 (+)
• Length: 324 a.a.
• NCBI ID: WP_024051204.1
• Uniprot ID: -
• Organism: Staphylococcus epidermidis strain 44DSE01
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 462868..473842

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QA587_RS02355	rpmG	463349..463498 (+)	150	WP_001830957.1	50S ribosomal protein L33	-
QA587_RS02360	-	463681..464232 (+)	552	WP_001831001.1	5-formyltetrahydrofolate cyclo-ligase	-
QA587_RS02365	-	464233..465693 (+)	1461	WP_001832757.1	rhomboid family intramembrane serine protease	-
QA587_RS02370	-	465677..465877 (+)	201	WP_001831138.1	YqgQ family protein	-
QA587_RS02375	-	465877..466863 (+)	987	WP_001831113.1	ROK family glucokinase	-
QA587_RS02380	-	466863..467189 (+)	327	WP_001831234.1	MTH1187 family thiamine-binding protein	-
QA587_RS02385	-	467189..467812 (+)	624	WP_002446535.1	MBL fold metallo-hydrolase	-
QA587_RS02390	comGA	467868..468842 (+)	975	WP_024051204.1	competence type IV pilus ATPase ComGA	Machinery gene
QA587_RS02395	comGB	468814..469881 (+)	1068	WP_024051203.1	competence type IV pilus assembly protein ComGB	Machinery gene
QA587_RS02400	comGC	469899..470216 (+)	318	WP_001831271.1	competence type IV pilus major pilin ComGC	Machinery gene
QA587_RS02405	comGD	470206..470643 (+)	438	WP_001831025.1	competence type IV pilus minor pilin ComGD	-
QA587_RS02410	-	470630..470923 (+)	294	WP_099797718.1	hypothetical protein	-
QA587_RS02415	-	470847..471338 (+)	492	WP_002440043.1	competence type IV pilus minor pilin ComGF	-
QA587_RS02420	-	471503..472015 (+)	513	WP_002497929.1	shikimate kinase	-
QA587_RS02425	gcvT	472233..473324 (+)	1092	WP_099797720.1	glycine cleavage system aminomethyltransferase GcvT	-

Sequence

Protein

• Length: 324 a.a.
• Molecular weight: 37329.45 Da
• Isoelectric Point: 8.9899

>NTDB_id=812378 QA587_RS02390 WP_024051204.1 467868..468842(+) (comGA) [Staphylococcus epidermidis strain 44DSE01]
MKILFEQIINHAIKQEASDIHFIPCEEHTIIKLRIKDELTIYDRLSFPIYKKLLIYMKFQSGLDVSTQHRAQSGRYSYKM
KHLYYLRISTLPLSLGNESCVIRIVPQYFQTTRESYEFKDFKHFMKKKQGLLLFSGPTGSGKSTLMYQMVLYAHQKLNLN
VISVEDPVEQILNGITQISVNEKAGINYESSFKAILRCNPDVILIGEIRDSTVAKYVIQASLSGHLVLSTMHANDCKGAL
LRLLEMGISVQELCQAINLISNQRLITTTTNYRQLVSELMFQSQINYFFEHNHSLPKNFTKLATHLNKMSKEGVICEEVV
DKYI

Nucleotide

• Length: 975 bp

>NTDB_id=812378 QA587_RS02390 WP_024051204.1 467868..468842(+) (comGA) [Staphylococcus epidermidis strain 44DSE01]
TTGAAAATTTTATTTGAACAGATTATCAATCATGCAATTAAGCAAGAAGCAAGTGACATACACTTTATACCATGTGAGGA
ACACACTATAATTAAGCTAAGAATTAAAGATGAGCTCACAATATATGATAGACTTTCATTTCCAATTTATAAAAAATTAC
TTATATACATGAAGTTTCAATCTGGCTTAGATGTATCAACACAGCATAGAGCACAAAGTGGTAGATATAGTTATAAGATG
AAGCATTTATATTATTTAAGAATCTCTACATTACCTTTATCATTAGGCAATGAAAGTTGTGTAATTCGTATAGTACCTCA
ATACTTCCAAACTACACGAGAATCATATGAATTTAAAGATTTTAAACACTTTATGAAAAAGAAACAAGGTCTACTTTTGT
TTAGTGGACCAACTGGCTCTGGCAAAAGTACTTTAATGTACCAAATGGTCCTTTATGCACATCAAAAATTGAATTTAAAT
GTAATATCAGTTGAAGATCCAGTTGAGCAAATACTTAATGGAATCACACAAATATCAGTCAATGAAAAGGCAGGTATAAA
TTATGAAAGCTCTTTCAAAGCCATTTTAAGGTGTAATCCAGATGTAATTTTAATTGGTGAAATCAGAGATTCTACCGTAG
CTAAATACGTGATTCAAGCCAGTTTAAGCGGGCATTTAGTTTTGTCGACAATGCACGCGAATGATTGCAAGGGAGCACTA
TTACGATTATTAGAAATGGGTATTTCTGTCCAAGAGTTGTGCCAGGCAATCAATTTAATTTCTAATCAAAGATTAATCAC
TACTACTACAAATTATCGTCAACTAGTATCGGAATTAATGTTTCAAAGCCAAATAAATTATTTTTTTGAACATAATCATT
CTTTACCTAAAAATTTCACAAAATTAGCTACACATTTAAACAAAATGTCTAAAGAAGGTGTTATATGTGAAGAAGTTGTC
GATAAATACATTTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (7-266)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGA	Staphylococcus aureus MW2	69.753	100	0.698
comGA	Staphylococcus aureus N315	69.753	100	0.698