Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | P9K36_RS21510 | Genome accession | NZ_CP121475 |
| Coordinates | 4587800..4588375 (+) | Length | 191 a.a. |
| NCBI ID | WP_278305958.1 | Uniprot ID | - |
| Organism | Methylobacterium sp. 391_Methyba4 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 4588939..4624893 | 4587800..4588375 | flank | 564 |
Gene organization within MGE regions
Location: 4587800..4624893
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P9K36_RS21510 (P9K36_21510) | ssb | 4587800..4588375 (+) | 576 | WP_278305958.1 | single-stranded DNA-binding protein | Machinery gene |
| P9K36_RS21515 (P9K36_21515) | - | 4589065..4590135 (+) | 1071 | WP_278305959.1 | tyrosine-type recombinase/integrase | - |
| P9K36_RS21520 (P9K36_21520) | - | 4590132..4591724 (+) | 1593 | WP_278305960.1 | tyrosine-type recombinase/integrase | - |
| P9K36_RS21525 (P9K36_21525) | - | 4593870..4594880 (+) | 1011 | WP_043759035.1 | GSU2403 family nucleotidyltransferase fold protein | - |
| P9K36_RS21530 (P9K36_21530) | - | 4594930..4595202 (+) | 273 | WP_278305961.1 | hypothetical protein | - |
| P9K36_RS21535 (P9K36_21535) | - | 4595347..4595559 (+) | 213 | WP_278305962.1 | hypothetical protein | - |
| P9K36_RS21540 (P9K36_21540) | - | 4595556..4595969 (+) | 414 | WP_043759040.1 | hypothetical protein | - |
| P9K36_RS21545 (P9K36_21545) | - | 4596081..4596329 (+) | 249 | WP_043759042.1 | hypothetical protein | - |
| P9K36_RS21550 (P9K36_21550) | - | 4596326..4596808 (+) | 483 | WP_278305963.1 | hypothetical protein | - |
| P9K36_RS21555 (P9K36_21555) | - | 4596987..4597517 (-) | 531 | WP_278305964.1 | GNAT family N-acetyltransferase | - |
| P9K36_RS21560 (P9K36_21560) | - | 4597943..4598038 (+) | 96 | Protein_4265 | IS5/IS1182 family transposase | - |
| P9K36_RS21565 (P9K36_21565) | - | 4598070..4598492 (-) | 423 | WP_052083663.1 | hypothetical protein | - |
| P9K36_RS21570 (P9K36_21570) | - | 4598494..4599132 (-) | 639 | WP_278305965.1 | hypothetical protein | - |
| P9K36_RS21575 (P9K36_21575) | - | 4599129..4599629 (-) | 501 | WP_043759044.1 | hypothetical protein | - |
| P9K36_RS21580 (P9K36_21580) | - | 4599628..4600206 (+) | 579 | WP_236953043.1 | hypothetical protein | - |
| P9K36_RS21585 (P9K36_21585) | - | 4600283..4600744 (+) | 462 | WP_278305966.1 | hypothetical protein | - |
| P9K36_RS21590 (P9K36_21590) | - | 4600774..4601190 (-) | 417 | WP_043759045.1 | hypothetical protein | - |
| P9K36_RS21595 (P9K36_21595) | - | 4601463..4602329 (-) | 867 | WP_278305967.1 | phosphotransferase | - |
| P9K36_RS21600 (P9K36_21600) | - | 4603540..4604001 (-) | 462 | WP_278305969.1 | hypothetical protein | - |
| P9K36_RS21605 (P9K36_21605) | - | 4605276..4605536 (+) | 261 | WP_278305970.1 | hypothetical protein | - |
| P9K36_RS21610 (P9K36_21610) | - | 4605552..4607171 (+) | 1620 | WP_278307318.1 | AAA family ATPase | - |
| P9K36_RS21615 (P9K36_21615) | - | 4607585..4608061 (-) | 477 | WP_043354504.1 | hypothetical protein | - |
| P9K36_RS21620 (P9K36_21620) | - | 4608209..4608508 (-) | 300 | WP_043385077.1 | hypothetical protein | - |
| P9K36_RS21625 (P9K36_21625) | - | 4608648..4608962 (-) | 315 | WP_043354509.1 | hypothetical protein | - |
| P9K36_RS21630 (P9K36_21630) | - | 4609052..4609321 (-) | 270 | WP_053610099.1 | hypothetical protein | - |
| P9K36_RS21635 (P9K36_21635) | - | 4609431..4610213 (-) | 783 | WP_043385070.1 | SDR family oxidoreductase | - |
| P9K36_RS21640 (P9K36_21640) | - | 4610492..4611370 (-) | 879 | WP_043354517.1 | SDR family oxidoreductase | - |
| P9K36_RS21645 (P9K36_21645) | xth | 4611647..4612456 (-) | 810 | WP_043354519.1 | exodeoxyribonuclease III | - |
| P9K36_RS21650 (P9K36_21650) | - | 4612617..4613357 (+) | 741 | WP_278305971.1 | lysophospholipid acyltransferase family protein | - |
| P9K36_RS21655 (P9K36_21655) | - | 4613367..4614278 (-) | 912 | WP_278305972.1 | outer-membrane lipoprotein carrier protein LolA | - |
| P9K36_RS21660 (P9K36_21660) | - | 4614562..4617825 (-) | 3264 | WP_278307319.1 | DNA translocase FtsK | - |
| P9K36_RS21665 (P9K36_21665) | - | 4618169..4620232 (+) | 2064 | WP_278305973.1 | NAD(+) synthase | - |
| P9K36_RS21670 (P9K36_21670) | - | 4620349..4620579 (+) | 231 | WP_043351157.1 | hypothetical protein | - |
| P9K36_RS21675 (P9K36_21675) | - | 4620860..4621264 (+) | 405 | WP_043351152.1 | PilZ domain-containing protein | - |
| P9K36_RS21680 (P9K36_21680) | - | 4621268..4621705 (-) | 438 | WP_043387800.1 | HIT family protein | - |
| P9K36_RS21685 (P9K36_21685) | - | 4621899..4622858 (+) | 960 | WP_043351145.1 | cation diffusion facilitator family transporter | - |
| P9K36_RS21690 (P9K36_21690) | - | 4623406..4623666 (+) | 261 | WP_078947335.1 | PepSY domain-containing protein | - |
| P9K36_RS21695 (P9K36_21695) | - | 4623849..4624703 (-) | 855 | WP_278305974.1 | SDR family oxidoreductase | - |
| P9K36_RS21700 (P9K36_21700) | - | 4624714..4624893 (-) | 180 | WP_043351142.1 | DUF1328 domain-containing protein | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 20160.06 Da Isoelectric Point: 6.0119
>NTDB_id=812364 P9K36_RS21510 WP_278305958.1 4587800..4588375(+) (ssb) [Methylobacterium sp. 391_Methyba4]
MAGSVNKVILVGNLGRDPEMRRLGSGDPVCNLRLATSESWKDKATGERKEKTEWHSVVIYNDNLARVAEQYLRKGSKVYI
EGQLQTRKWTDNSGVEKYTTEVVLQRFRGEMTILDGRGGGGDFAGEEEGGGQISRGGDFGGGRGGDRGGDFGGGRAQSGE
RRPAPASSGGGGNGGGGGSRGGYDLDDDIPF
MAGSVNKVILVGNLGRDPEMRRLGSGDPVCNLRLATSESWKDKATGERKEKTEWHSVVIYNDNLARVAEQYLRKGSKVYI
EGQLQTRKWTDNSGVEKYTTEVVLQRFRGEMTILDGRGGGGDFAGEEEGGGQISRGGDFGGGRGGDRGGDFGGGRAQSGE
RRPAPASSGGGGNGGGGGSRGGYDLDDDIPF
Nucleotide
Download Length: 576 bp
>NTDB_id=812364 P9K36_RS21510 WP_278305958.1 4587800..4588375(+) (ssb) [Methylobacterium sp. 391_Methyba4]
ATGGCGGGCAGCGTCAACAAGGTGATTCTGGTGGGCAATCTCGGGCGCGATCCCGAGATGCGCCGCCTCGGGTCGGGCGA
CCCGGTCTGCAACCTGCGGCTCGCGACGTCGGAGTCGTGGAAGGACAAGGCGACCGGCGAGCGCAAGGAGAAGACCGAGT
GGCACTCGGTCGTCATCTACAACGACAACCTCGCCCGGGTGGCCGAGCAGTACCTGCGCAAGGGCTCGAAGGTCTATATC
GAGGGCCAGCTTCAGACCCGGAAGTGGACCGACAATTCCGGCGTCGAGAAGTACACGACCGAGGTGGTGCTCCAGCGCTT
CCGCGGCGAGATGACGATCCTCGACGGGCGCGGCGGCGGCGGCGACTTCGCCGGCGAGGAAGAGGGCGGCGGCCAGATCA
GCCGCGGCGGGGATTTCGGGGGCGGCCGGGGCGGTGACCGCGGCGGCGATTTCGGAGGCGGTCGCGCCCAAAGCGGCGAG
CGGCGTCCGGCTCCGGCCTCCTCGGGCGGTGGCGGCAACGGCGGCGGCGGCGGAAGCCGCGGCGGCTACGACCTCGACGA
CGACATCCCGTTCTGA
ATGGCGGGCAGCGTCAACAAGGTGATTCTGGTGGGCAATCTCGGGCGCGATCCCGAGATGCGCCGCCTCGGGTCGGGCGA
CCCGGTCTGCAACCTGCGGCTCGCGACGTCGGAGTCGTGGAAGGACAAGGCGACCGGCGAGCGCAAGGAGAAGACCGAGT
GGCACTCGGTCGTCATCTACAACGACAACCTCGCCCGGGTGGCCGAGCAGTACCTGCGCAAGGGCTCGAAGGTCTATATC
GAGGGCCAGCTTCAGACCCGGAAGTGGACCGACAATTCCGGCGTCGAGAAGTACACGACCGAGGTGGTGCTCCAGCGCTT
CCGCGGCGAGATGACGATCCTCGACGGGCGCGGCGGCGGCGGCGACTTCGCCGGCGAGGAAGAGGGCGGCGGCCAGATCA
GCCGCGGCGGGGATTTCGGGGGCGGCCGGGGCGGTGACCGCGGCGGCGATTTCGGAGGCGGTCGCGCCCAAAGCGGCGAG
CGGCGTCCGGCTCCGGCCTCCTCGGGCGGTGGCGGCAACGGCGGCGGCGGCGGAAGCCGCGGCGGCTACGACCTCGACGA
CGACATCCCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
47.475 |
100 |
0.492 |
| ssb | Vibrio cholerae strain A1552 |
47.059 |
97.906 |
0.461 |
| ssb | Neisseria meningitidis MC58 |
38.22 |
100 |
0.382 |
| ssb | Neisseria gonorrhoeae MS11 |
37.696 |
100 |
0.377 |