Detailed information NTG0812349

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: Thiosp_RS21395
• Genome accession: NZ_CP121473
• Coordinates: 4694741..4696015 (+)
• Length: 424 a.a.
• NCBI ID: WP_201062986.1
• Uniprot ID: -
• Organism: Thiorhodovibrio litoralis strain 06511
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4689741..4701015

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Thiosp_RS21380 (Thiosp_04332)	-	4690247..4692376 (+)	2130	WP_201062989.1	DUF2868 domain-containing protein	-
Thiosp_RS21385 (Thiosp_04333)	-	4692376..4693821 (+)	1446	WP_201062988.1	GTPase/DUF3482 domain-containing protein	-
Thiosp_RS21390 (Thiosp_04334)	-	4693914..4694486 (-)	573	WP_207187954.1	DsrE family protein	-
Thiosp_RS21395 (Thiosp_04335)	pilU	4694741..4696015 (+)	1275	WP_201062986.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
Thiosp_RS21400 (Thiosp_04336)	pilU	4696072..4697127 (+)	1056	WP_201062985.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
Thiosp_RS21405 (Thiosp_04337)	hisC	4697236..4698375 (-)	1140	WP_201062984.1	histidinol-phosphate transaminase	-
Thiosp_RS21410 (Thiosp_04338)	hisD	4698405..4699709 (-)	1305	WP_201062983.1	histidinol dehydrogenase	-
Thiosp_RS21415 (Thiosp_04339)	hisG	4699730..4700365 (-)	636	WP_201062982.1	ATP phosphoribosyltransferase	-

Sequence

Protein

• Length: 424 a.a.
• Molecular weight: 47002.93 Da
• Isoelectric Point: 4.8550

>NTDB_id=812349 Thiosp_RS21395 WP_201062986.1 4694741..4696015(+) (pilU) [Thiorhodovibrio litoralis strain 06511]
MDRQQAAKFMLDCLRMMLARKGSDLFVSSGFPPACKIDGKLTPLSEKALTSEQTGVLVRSIMNDFQLKEYDAKKECNFAI
SPSGIGRFRVNAFVQQGRAGVVLRTIPTQIPDMDEMGLPPVMKDLVLTKRGMILLVGGTGSGKSTSLAAMLGYRNEKTHG
HIITIEDPVEFVHEHRNCLITQREVGVDTDSWDNALINTLRQAPNVILIGEIRQRETMEHAVNFSETGHLCLSTLHANNA
NQALDRIINMFPEERRAQLLMDLSLNLKAVISQRLLPRIGGGRVAAIEIMINSPLIQDLIFKGKVHDIKGVMKRSRELGM
QTFDMALFDLYEAGLITFEDALRSADSMNELRLKIKLESAEATEGDAFGEANGLALVGEDEEDLPPEEIGKKFGTTEDPS
ETAFDLDSFDLAEASMDLESEFKR

Nucleotide

• Length: 1275 bp

>NTDB_id=812349 Thiosp_RS21395 WP_201062986.1 4694741..4696015(+) (pilU) [Thiorhodovibrio litoralis strain 06511]
ATGGATCGCCAACAAGCCGCCAAATTCATGCTCGATTGTTTGCGCATGATGCTTGCCCGCAAGGGCTCCGACCTGTTCGT
CAGCTCCGGTTTCCCGCCCGCGTGCAAGATCGACGGCAAGCTGACTCCTCTGAGCGAAAAGGCCCTGACCTCGGAGCAGA
CCGGAGTCTTGGTGCGCTCGATCATGAACGACTTCCAGCTCAAGGAGTATGACGCCAAAAAGGAATGCAACTTCGCCATC
AGCCCGTCCGGTATCGGCCGTTTTCGCGTCAACGCGTTCGTACAGCAGGGACGCGCCGGCGTCGTGCTGCGCACCATCCC
GACACAAATCCCCGACATGGACGAGATGGGCCTGCCGCCGGTGATGAAGGACCTGGTGTTGACCAAGCGCGGCATGATTC
TGCTGGTTGGCGGCACTGGCTCGGGTAAGTCAACCTCCTTGGCCGCCATGCTTGGCTATCGCAACGAAAAAACCCATGGC
CACATCATCACCATCGAGGACCCGGTCGAGTTCGTGCATGAGCACCGCAACTGCCTGATCACCCAGCGCGAGGTCGGCGT
GGATACCGACTCCTGGGACAACGCCCTGATAAACACCCTGCGCCAGGCGCCGAACGTGATCCTGATCGGTGAGATCCGCC
AGCGCGAGACCATGGAGCATGCAGTCAACTTCTCCGAGACCGGCCATCTGTGCCTGTCCACCCTGCATGCCAACAACGCC
AACCAGGCACTCGATCGCATCATCAACATGTTCCCGGAGGAACGCCGCGCGCAGTTGCTGATGGATCTGTCGCTGAACCT
GAAAGCAGTTATTTCCCAGCGCTTGCTGCCGCGCATCGGCGGAGGACGAGTCGCGGCGATCGAGATCATGATCAACAGCC
CACTGATTCAGGATCTGATTTTCAAAGGGAAGGTGCATGACATCAAGGGCGTCATGAAGCGTTCGCGTGAGCTTGGCATG
CAAACCTTCGACATGGCGCTGTTCGACCTCTACGAAGCGGGCCTGATTACCTTCGAGGATGCTCTGCGCAGCGCCGACTC
GATGAACGAGCTACGCCTGAAGATCAAGCTCGAAAGCGCCGAGGCAACCGAGGGCGACGCCTTCGGCGAGGCGAACGGAC
TCGCGCTGGTCGGCGAGGACGAGGAAGACCTGCCGCCCGAAGAAATCGGCAAGAAGTTCGGTACCACGGAAGACCCATCG
GAGACCGCCTTCGACCTCGACAGCTTCGACCTGGCCGAGGCCTCGATGGACCTGGAATCGGAATTCAAACGCTAG

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (120-276)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	59.569	87.5	0.521
pilU	Acinetobacter baylyi ADP1	55.493	83.726	0.465
pilU	Vibrio cholerae strain A1552	52.101	84.198	0.439