Detailed information NTG0812345

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: Thiosp_RS17915
• Genome accession: NZ_CP121473
• Coordinates: 3961959..3962867 (-)
• Length: 302 a.a.
• NCBI ID: WP_201067778.1
• Uniprot ID: -
• Organism: Thiorhodovibrio litoralis strain 06511
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3956959..3967867

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Thiosp_RS17885 (Thiosp_03620)	-	3957413..3957661 (-)	249	WP_201067773.1	hypothetical protein	-
Thiosp_RS17890	-	3957741..3957866 (+)	126	WP_274607944.1	hypothetical protein	-
Thiosp_RS17895 (Thiosp_03621)	-	3957955..3959304 (+)	1350	WP_201067774.1	glycoside hydrolase family 57	-
Thiosp_RS17900 (Thiosp_03622)	-	3959301..3960767 (+)	1467	WP_201067775.1	glycosyl hydrolase family 57	-
Thiosp_RS17905 (Thiosp_03623)	-	3961024..3961209 (+)	186	WP_201067776.1	hypothetical protein	-
Thiosp_RS17910 (Thiosp_03624)	coaE	3961311..3961958 (-)	648	WP_201067777.1	dephospho-CoA kinase	-
Thiosp_RS17915 (Thiosp_03625)	pilD	3961959..3962867 (-)	909	WP_201067778.1	A24 family peptidase	Machinery gene
Thiosp_RS17920 (Thiosp_03626)	pilC	3962925..3964163 (-)	1239	WP_201067779.1	type II secretion system F family protein	Machinery gene
Thiosp_RS17925 (Thiosp_03627)	pilB	3964169..3965881 (-)	1713	WP_201067780.1	type IV-A pilus assembly ATPase PilB	Machinery gene
Thiosp_RS17930 (Thiosp_03628)	-	3966044..3966877 (-)	834	WP_201067794.1	NYN domain-containing protein	-

Sequence

Protein

• Length: 302 a.a.
• Molecular weight: 33034.08 Da
• Isoelectric Point: 6.0833

>NTDB_id=812345 Thiosp_RS17915 WP_201067778.1 3961959..3962867(-) (pilD) [Thiorhodovibrio litoralis strain 06511]
MTALISVFAETPWLFYSTTVLFGLLIGSFLNVVILRLPRMMEFEWQRDCADLQVATAGEASPPSLDPPSAESEPFGLARP
ASHCPACGHRIRPWENIPVISYLLLRGRCSACHAQIALRYPLIEMLTAALSLVVVWYFGFTPQAAAALLFTWAMIALAII
DFDTQLLPDAITLPLLWLGLLLSLFGVFVDAETAIIGAIAGYLSLWLVFQLFRVLTGREGMGRGDFKLLAVFGAWMGWQA
LPQIILLSAVPGAVVGIALIAFGRHQQRAPMPFGPYLAIAGWVSLLWGADITNAYLRWSGLA

Nucleotide

• Length: 909 bp

>NTDB_id=812345 Thiosp_RS17915 WP_201067778.1 3961959..3962867(-) (pilD) [Thiorhodovibrio litoralis strain 06511]
ATGACCGCTCTCATTTCCGTTTTTGCCGAAACACCTTGGTTGTTCTACAGCACCACCGTCCTGTTCGGATTGCTGATCGG
CAGCTTTCTCAATGTCGTCATTCTGCGCCTGCCGCGCATGATGGAGTTCGAGTGGCAGCGCGATTGTGCCGACTTGCAAG
TGGCCACTGCCGGCGAGGCCTCGCCGCCATCCCTGGACCCACCGTCGGCTGAATCCGAACCCTTCGGCCTCGCGCGCCCG
GCCTCGCACTGTCCAGCCTGCGGACATCGCATTCGCCCGTGGGAAAATATCCCGGTGATCAGTTATTTGCTGCTGCGCGG
GCGTTGCTCGGCCTGTCACGCGCAAATCGCGCTGCGTTATCCGCTGATCGAAATGCTGACCGCTGCGCTTAGCTTAGTGG
TCGTATGGTATTTCGGCTTCACCCCGCAGGCCGCAGCAGCGTTGTTGTTTACTTGGGCCATGATCGCGCTCGCGATCATC
GACTTCGACACCCAATTGCTGCCGGACGCCATCACTCTGCCGTTGTTATGGCTTGGACTGTTGCTGAGTCTGTTCGGCGT
CTTCGTCGATGCCGAAACAGCCATCATCGGCGCCATCGCGGGTTATCTCAGCTTGTGGTTGGTGTTTCAGCTGTTCCGGG
TGCTGACCGGGCGCGAAGGTATGGGGCGTGGGGACTTCAAACTGCTGGCTGTTTTCGGTGCCTGGATGGGCTGGCAGGCG
CTGCCGCAGATCATCTTGCTATCTGCCGTGCCGGGTGCCGTCGTCGGCATCGCGCTGATTGCCTTCGGGCGACACCAGCA
ACGTGCACCCATGCCCTTCGGCCCCTATCTGGCCATCGCCGGTTGGGTCAGCCTGCTGTGGGGGGCTGATATCACCAACG
CCTATCTGCGCTGGAGCGGCCTCGCCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-138)

• Type IV leader peptidase family (Peptidase_A24) (149-257)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	52.041	97.351	0.507
pilD	Vibrio cholerae strain A1552	50.667	99.338	0.503
pilD	Acinetobacter nosocomialis M2	50	98.675	0.493
pilD	Acinetobacter baumannii D1279779	50	98.675	0.493
pilD	Neisseria gonorrhoeae MS11	47.348	87.417	0.414