Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   P8P68_RS08685 Genome accession   NZ_CP121467
Coordinates   1780415..1782382 (+) Length   655 a.a.
NCBI ID   WP_084945100.1    Uniprot ID   -
Organism   Streptococcus sp. D7B5     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1775415..1787382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8P68_RS08670 (P8P68_08670) - 1775831..1776862 (+) 1032 WP_278275874.1 HAMP domain-containing sensor histidine kinase -
  P8P68_RS08675 (P8P68_08675) - 1776998..1778482 (-) 1485 WP_000743564.1 DUF1846 domain-containing protein -
  P8P68_RS08680 (P8P68_08680) - 1778635..1780245 (+) 1611 WP_278275875.1 alpha-glucosidase -
  P8P68_RS08685 (P8P68_08685) amiA 1780415..1782382 (+) 1968 WP_084945100.1 peptide ABC transporter substrate-binding protein Regulator
  P8P68_RS08690 (P8P68_08690) amiA3 1782529..1784490 (+) 1962 WP_000594275.1 peptide ABC transporter substrate-binding protein Regulator
  P8P68_RS08695 (P8P68_08695) - 1784682..1786127 (+) 1446 WP_000091224.1 LCP family protein -
  P8P68_RS08700 (P8P68_08700) cps4B 1786129..1786860 (+) 732 WP_000565332.1 capsular polysaccharide biosynthesis protein Cps4B -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72452.92 Da        Isoelectric Point: 5.0129

>NTDB_id=812260 P8P68_RS08685 WP_084945100.1 1780415..1782382(+) (amiA) [Streptococcus sp. D7B5]
MKSKKWLLGAGAVLSAAILLTACGQSEKKADAPKTFSYVYAMDPSSLDYSVTSKSSTSDVIANVVDGLLENDKYGNLIPS
LAEDWSVSKDGLTYTYKLRKGVKWYTSDGEEYAEVKAKDFVTGLKHAADGKSDGLSLIQDSIKGLAEYVSGESNDFSTVG
VKAVDDYTVEYTLNKPESFWNSKVTTATMLPVNEEFLNSKGSDYGAPTPSGILYNGPYFLKSLTSKSVIEYEKNPNYWDK
DNVKIDNIKLTFYDGSDQESLIRSFTQGAYTTARLFPTSSNFESTKQEYGDKIVYSPQEATSYYLTVNVNRQSYNKTAKT
DEAQKTSTKEALLNKNFRQALNFALDRHSYTAQLNGEEGANKIIRNSLVPHDYVQVGEKTFGELAQAELVSYGDQWKDVA
LTDGKDTIYSPEKAKAAFAKAKEELQAKGVTFPIHLDIPVEQTDVIAVQQTNSLKQSIESSLGTENVIVDVLQMTDNEKL
SITSQAKVPSQKDYDLNGTGWGPDYQDPATYLNILDAKKGSALKHLGIKRGNDPEVMAQVGLDEYKKLLDDAAAETSDLN
KRYEKYAKAQAWVSDSSLLIPVASSGGSPTVSRTVPFTKAYSQVGIKGDPFVFKGLELQNDVVTAKEYEEAFKKWQQEKI
ETNAKYQKELEKHVK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=812260 P8P68_RS08685 WP_084945100.1 1780415..1782382(+) (amiA) [Streptococcus sp. D7B5]
ATGAAATCGAAAAAGTGGCTCTTAGGAGCAGGTGCTGTTTTGAGTGCAGCCATACTGTTAACTGCTTGTGGGCAAAGTGA
AAAGAAAGCGGATGCTCCCAAGACTTTCTCTTATGTCTACGCTATGGATCCATCTTCTTTGGATTATAGTGTGACGAGCA
AGAGCTCAACCTCTGACGTTATAGCAAACGTTGTTGATGGTCTTTTGGAAAATGATAAGTATGGGAACTTAATTCCATCA
CTTGCAGAAGACTGGTCTGTTTCAAAGGATGGTTTGACTTACACCTACAAACTTCGTAAGGGTGTAAAATGGTATACTTC
TGATGGAGAAGAATACGCTGAAGTTAAGGCCAAAGACTTTGTTACTGGGCTTAAACATGCTGCTGACGGAAAATCAGATG
GTCTTTCTTTGATTCAGGATTCTATCAAAGGTTTGGCAGAGTATGTTAGTGGTGAGAGCAATGATTTCTCTACCGTAGGA
GTTAAGGCTGTTGATGATTACACGGTAGAATACACGCTCAACAAACCAGAAAGTTTCTGGAACTCTAAGGTCACAACTGC
AACCATGCTGCCAGTTAATGAAGAATTTTTGAATTCTAAAGGGAGCGACTACGGTGCACCAACCCCATCAGGTATCCTAT
ATAATGGTCCTTATTTCTTGAAATCATTGACTTCAAAATCAGTCATCGAATATGAAAAGAATCCAAACTACTGGGATAAG
GACAATGTCAAGATTGACAATATTAAACTAACTTTCTACGATGGATCAGACCAAGAATCTTTGATTCGTAGCTTTACACA
AGGTGCCTATACAACAGCTCGTCTCTTCCCAACAAGTTCAAATTTTGAGTCAACTAAACAAGAGTACGGCGATAAGATTG
TTTATAGTCCACAAGAAGCGACAAGCTACTACCTCACTGTTAACGTAAACCGCCAATCTTATAATAAAACAGCCAAAACA
GACGAGGCTCAAAAAACTTCAACGAAAGAAGCTCTTCTCAACAAGAACTTCCGTCAGGCGCTGAACTTTGCTCTTGACCG
TCATTCTTATACTGCTCAGTTGAATGGTGAAGAAGGTGCGAACAAGATTATCCGTAACAGCCTAGTGCCTCATGACTACG
TTCAAGTGGGTGAAAAAACCTTTGGAGAGTTGGCACAGGCAGAGCTCGTTTCATATGGAGACCAGTGGAAAGATGTAGCC
CTTACAGATGGCAAGGATACGATTTACAGTCCTGAAAAAGCTAAGGCAGCCTTTGCTAAAGCCAAGGAAGAATTGCAAGC
CAAGGGTGTTACCTTCCCAATCCATTTGGATATCCCCGTTGAACAAACAGATGTAATCGCGGTTCAACAAACCAACTCAC
TCAAGCAGTCTATCGAATCATCACTTGGTACTGAAAATGTCATTGTCGATGTCCTTCAAATGACCGATAATGAGAAATTG
AGCATTACATCTCAAGCCAAGGTTCCATCCCAAAAAGACTATGACTTGAACGGAACTGGTTGGGGGCCAGACTATCAAGA
CCCAGCTACCTACCTCAACATCCTTGATGCTAAGAAGGGTTCTGCCCTTAAACACTTGGGGATTAAGCGCGGAAATGATC
CAGAAGTGATGGCTCAAGTTGGATTGGACGAATACAAGAAACTCTTGGATGACGCTGCAGCTGAAACAAGCGACCTTAAC
AAGCGTTATGAAAAATATGCTAAAGCTCAAGCTTGGGTATCGGATAGTTCACTTTTAATCCCAGTTGCTTCTTCAGGTGG
TTCTCCAACGGTTAGCCGTACTGTACCATTTACAAAAGCTTACTCTCAAGTCGGGATCAAGGGAGACCCATTTGTGTTCA
AAGGTTTGGAGTTGCAAAATGACGTTGTGACTGCAAAAGAATACGAAGAAGCCTTCAAGAAATGGCAACAAGAAAAAATC
GAGACAAATGCCAAATACCAAAAAGAACTTGAAAAACACGTCAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

55.69

100

0.56
  amiA3 Streptococcus thermophilus LMD-9

54.394

100

0.548
  amiA3 Streptococcus thermophilus LMG 18311

54.009

100

0.545