Detailed information    

insolico Bioinformatically predicted

Overview


Name   cclA/cilC   Type   Machinery gene
Locus tag   P8P68_RS04700 Genome accession   NZ_CP121467
Coordinates   973830..974492 (+) Length   220 a.a.
NCBI ID   WP_278276282.1    Uniprot ID   A0AAX3TMF4
Organism   Streptococcus sp. D7B5     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 968830..979492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8P68_RS04660 (P8P68_04660) - 969943..970179 (+) 237 WP_000964741.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  P8P68_RS04665 (P8P68_04665) amaP 970279..970842 (+) 564 WP_000045613.1 alkaline shock response membrane anchor protein AmaP -
  P8P68_RS04670 (P8P68_04670) - 970854..971024 (+) 171 WP_278276280.1 DUF2273 domain-containing protein -
  P8P68_RS04675 (P8P68_04675) - 971036..971620 (+) 585 WP_049489623.1 Asp23/Gls24 family envelope stress response protein -
  P8P68_RS04680 (P8P68_04680) - 971662..971865 (+) 204 WP_000102421.1 CsbD family protein -
  P8P68_RS04685 (P8P68_04685) - 972085..972606 (-) 522 WP_084944112.1 hypothetical protein -
  P8P68_RS04690 (P8P68_04690) - 972677..973201 (-) 525 WP_278276281.1 thiol-disulfide isomerase -
  P8P68_RS04695 (P8P68_04695) - 973305..973760 (-) 456 WP_049519700.1 GNAT family N-acetyltransferase -
  P8P68_RS04700 (P8P68_04700) cclA/cilC 973830..974492 (+) 663 WP_278276282.1 A24 family peptidase Machinery gene
  P8P68_RS04705 (P8P68_04705) - 974481..974936 (-) 456 WP_142349700.1 effector binding domain-containing protein -
  P8P68_RS04710 (P8P68_04710) - 975015..975914 (+) 900 WP_278276283.1 YafY family protein -
  P8P68_RS04715 (P8P68_04715) trpA 976004..976780 (-) 777 WP_278276284.1 tryptophan synthase subunit alpha -
  P8P68_RS04720 (P8P68_04720) trpB 976773..977996 (-) 1224 WP_278276285.1 tryptophan synthase subunit beta -
  P8P68_RS04725 (P8P68_04725) - 977974..978573 (-) 600 WP_000169865.1 phosphoribosylanthranilate isomerase -
  P8P68_RS04730 (P8P68_04730) trpC 978560..979327 (-) 768 WP_278276286.1 indole-3-glycerol phosphate synthase TrpC -

Sequence


Protein


Download         Length: 220 a.a.        Molecular weight: 25276.57 Da        Isoelectric Point: 8.3805

>NTDB_id=812215 P8P68_RS04700 WP_278276282.1 973830..974492(+) (cclA/cilC) [Streptococcus sp. D7B5]
MIDLYFFLVGSILASFLGLVIDRFPEQSIIRPASHCNSCQTRLRPLDLIPILSQVFNRFRCRYCKIRYPFWYALFELGLG
ILFLAWSWGWISLGQVILITAGLTLGIYDFRHQEYPLMVWLTFHLILMACSGWNLVMVFFLILGILAHFIDIRMGAGDFL
FLASCALVFSVTELLILIQFASAAGILAFLLQKKKERLPFVPFLLLAATIIIFYQFLLVC

Nucleotide


Download         Length: 663 bp        

>NTDB_id=812215 P8P68_RS04700 WP_278276282.1 973830..974492(+) (cclA/cilC) [Streptococcus sp. D7B5]
ATGATTGATCTTTATTTTTTTCTTGTCGGGAGCATTCTCGCTTCCTTCTTGGGTTTGGTCATTGACCGTTTTCCTGAGCA
ATCCATTATCCGACCAGCTAGTCACTGTAATTCCTGTCAGACTCGCTTGCGTCCGTTGGATTTGATTCCTATCCTCTCGC
AGGTATTTAATCGCTTTCGCTGTCGCTACTGCAAGATTCGCTATCCGTTCTGGTATGCCCTCTTTGAACTAGGATTAGGA
ATCCTCTTTCTAGCTTGGTCTTGGGGCTGGATTTCCTTGGGCCAAGTCATCCTAATCACTGCTGGCTTGACCTTGGGCAT
CTACGACTTTCGCCATCAGGAATATCCCTTAATGGTTTGGCTAACTTTCCACCTAATCCTCATGGCCTGCTCTGGCTGGA
ATCTGGTTATGGTCTTCTTTCTTATCCTTGGAATTTTGGCTCATTTTATCGATATCCGCATGGGCGCAGGGGATTTTCTC
TTTCTGGCTTCTTGTGCTCTCGTTTTTAGTGTGACAGAATTACTCATCTTGATTCAGTTCGCTTCTGCGGCAGGCATTCT
GGCCTTTCTCCTGCAAAAGAAAAAGGAAAGACTTCCTTTCGTGCCTTTCCTCTTACTTGCTGCAACTATAATAATTTTCT
ATCAGTTCTTATTAGTTTGTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

88.584

99.545

0.882

  cclA/cilC Streptococcus pneumoniae Rx1

88.584

99.545

0.882

  cclA/cilC Streptococcus pneumoniae D39

88.584

99.545

0.882

  cclA/cilC Streptococcus pneumoniae R6

88.584

99.545

0.882

  cclA/cilC Streptococcus pneumoniae TIGR4

87.671

99.545

0.873

  cclA/cilC Streptococcus mitis NCTC 12261

86.301

99.545

0.859