Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   PSm6_RS15530 Genome accession   NZ_AP023081
Coordinates   3419775..3421109 (-) Length   444 a.a.
NCBI ID   WP_021219360.1    Uniprot ID   A0AAU7Y6G6
Organism   Pseudomonas solani strain Sm006     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3414775..3426109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSm6_RS15495 (PSm6_31150) - 3415201..3415545 (-) 345 WP_265167686.1 hypothetical protein -
  PSm6_RS15500 (PSm6_31160) - 3415561..3416103 (-) 543 WP_265167687.1 PilX N-terminal domain-containing pilus assembly protein -
  PSm6_RS15505 (PSm6_31170) - 3416113..3416922 (-) 810 WP_265167688.1 PilW family protein -
  PSm6_RS15510 (PSm6_31180) pilV 3416919..3417494 (-) 576 WP_265167689.1 type IV pilus modification protein PilV -
  PSm6_RS15515 (PSm6_31190) - 3417481..3417999 (-) 519 WP_043243741.1 GspH/FimT family pseudopilin -
  PSm6_RS15520 (PSm6_31200) - 3418113..3418622 (-) 510 WP_184488762.1 GspH/FimT family protein -
  PSm6_RS15525 (PSm6_31210) thiO 3418665..3419762 (+) 1098 WP_265167690.1 glycine oxidase ThiO -
  PSm6_RS15530 (PSm6_31220) pilR 3419775..3421109 (-) 1335 WP_021219360.1 sigma-54 dependent transcriptional regulator Regulator
  PSm6_RS15535 (PSm6_31230) pilS 3421112..3422704 (-) 1593 WP_043243744.1 PAS domain-containing sensor histidine kinase Regulator
  PSm6_RS15540 (PSm6_31240) - 3422694..3422930 (-) 237 WP_021219358.1 PP0621 family protein -
  PSm6_RS15545 (PSm6_31250) - 3423113..3424132 (-) 1020 WP_021219357.1 outer membrane protein assembly factor BamD -
  PSm6_RS15550 (PSm6_31260) rluD 3424281..3425252 (+) 972 WP_021219356.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PSm6_RS15555 (PSm6_31270) pgeF 3425252..3425977 (+) 726 WP_265167691.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 444 a.a.        Molecular weight: 49586.77 Da        Isoelectric Point: 5.4271

>NTDB_id=81211 PSm6_RS15530 WP_021219360.1 3419775..3421109(-) (pilR) [Pseudomonas solani strain Sm006]
MTRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAAEPFDLCLTDMRLPDGTGLDLVQHIQQRHPQVPVAM
ITAYGSLDTAVNALKAGAFDFLTKPVDLGRLRELVAAALRLRTSSNGDTPMDNRLLGDSPPMKSLRNQIQKLARSQAPVY
ISGESGSGKELVARMIHEQGPRHEDPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKIGLFQAAHGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRTIGGQQEVVVDVRILSATHKDLAAEVAAGRFRQDLYYRLNVIELSVPPLRERREDIPQLADVM
LKRLAADSSAAASITRDAMEKLKSYRFPGNVRELENMLERAYTLCENDQIQPEDLRLTDAPAASENGEADLAQIDNLEDY
LEEVERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1335 bp        

>NTDB_id=81211 PSm6_RS15530 WP_021219360.1 3419775..3421109(-) (pilR) [Pseudomonas solani strain Sm006]
ATGACCAGACAGAAAGCACTCATCGTCGATGACGAGCCCGATATCCGCGAACTGCTGGAGATCACCCTCGGCCGGATGAA
GCTGGATACCCGCAGCGCCCGCAACGTGAAAGAGGCCCGCGAGCTCCTGGCCGCCGAACCCTTCGACCTGTGCCTCACCG
ACATGCGCCTGCCCGACGGCACCGGCCTCGACCTCGTTCAGCACATCCAGCAACGCCACCCTCAAGTGCCCGTTGCCATG
ATTACCGCCTACGGCAGCCTGGACACGGCCGTCAACGCCCTGAAAGCCGGCGCCTTCGACTTCCTCACCAAACCGGTGGA
CCTCGGCCGGCTTCGCGAGCTGGTGGCTGCGGCCTTGCGCCTGCGCACCAGCAGCAACGGCGACACGCCGATGGACAACC
GCCTGCTCGGCGACTCCCCGCCGATGAAGTCTCTGCGTAACCAGATCCAGAAGCTCGCCCGCAGCCAGGCCCCCGTGTAC
ATCAGCGGCGAATCCGGCAGCGGCAAGGAGCTGGTGGCCCGCATGATCCACGAGCAGGGCCCGCGCCATGAAGACCCCTT
CGTACCGGTCAACTGCGGCGCCATCCCGTCGGAGCTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACCG
GCGCCATCGAAGACAAGATCGGCCTGTTCCAGGCCGCCCACGGCGGCACCCTGTTCCTCGATGAAGTGGCCGACCTGCCC
CTGCCCATGCAGGTGAAACTGCTGCGCGCCATCCAGGAAAAAGCCGTCCGCACCATCGGCGGACAGCAGGAAGTGGTAGT
GGACGTGCGCATCCTCAGCGCCACCCACAAGGACCTGGCCGCAGAAGTGGCTGCAGGACGCTTCCGCCAGGACCTCTATT
ACCGCCTGAACGTCATCGAACTCAGCGTCCCTCCGCTGCGCGAGCGCCGCGAGGACATCCCGCAACTGGCCGACGTCATG
CTCAAGCGCCTGGCGGCGGACAGCAGCGCCGCGGCCAGCATCACCCGCGATGCGATGGAGAAGCTCAAGAGCTACCGCTT
CCCCGGCAACGTCCGCGAGCTGGAAAACATGCTGGAACGGGCCTACACGCTGTGTGAGAACGACCAGATCCAGCCTGAAG
ACCTGCGCCTGACGGATGCACCGGCGGCTTCCGAAAACGGCGAAGCCGACCTCGCGCAGATCGACAATCTCGAGGACTAC
CTGGAAGAGGTGGAGCGCAAGCTGATCATGCAGGCGCTCGAGGAAACCCGCTGGAACCGCACCGCCGCAGCCCAACGCCT
GGGCCTGACCTTCCGCTCGATGCGCTACCGCCTGAAGAAACTGGGGATCGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Response regulator receiver domain (Response_reg)

(7-115)

Bacterial regulatory protein, Fis family (HTH_8)

(401-441)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

86.742

100

0.869
  pilR Acinetobacter baumannii strain A118

49.783

100

0.516
  luxO Vibrio cholerae strain A1552

37.104

99.55

0.369

Multiple sequence alignment