Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   PSm6_RS15535 Genome accession   NZ_AP023081
Coordinates   3421112..3422704 (-) Length   530 a.a.
NCBI ID   WP_043243744.1    Uniprot ID   -
Organism   Pseudomonas solani strain Sm006     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3416112..3427704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSm6_RS15505 (PSm6_31170) - 3416113..3416922 (-) 810 WP_265167688.1 PilW family protein -
  PSm6_RS15510 (PSm6_31180) pilV 3416919..3417494 (-) 576 WP_265167689.1 type IV pilus modification protein PilV -
  PSm6_RS15515 (PSm6_31190) - 3417481..3417999 (-) 519 WP_043243741.1 GspH/FimT family pseudopilin -
  PSm6_RS15520 (PSm6_31200) - 3418113..3418622 (-) 510 WP_184488762.1 GspH/FimT family protein -
  PSm6_RS15525 (PSm6_31210) thiO 3418665..3419762 (+) 1098 WP_265167690.1 glycine oxidase ThiO -
  PSm6_RS15530 (PSm6_31220) pilR 3419775..3421109 (-) 1335 WP_021219360.1 sigma-54 dependent transcriptional regulator Regulator
  PSm6_RS15535 (PSm6_31230) pilS 3421112..3422704 (-) 1593 WP_043243744.1 PAS domain-containing sensor histidine kinase Regulator
  PSm6_RS15540 (PSm6_31240) - 3422694..3422930 (-) 237 WP_021219358.1 PP0621 family protein -
  PSm6_RS15545 (PSm6_31250) - 3423113..3424132 (-) 1020 WP_021219357.1 outer membrane protein assembly factor BamD -
  PSm6_RS15550 (PSm6_31260) rluD 3424281..3425252 (+) 972 WP_021219356.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PSm6_RS15555 (PSm6_31270) pgeF 3425252..3425977 (+) 726 WP_265167691.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58629.90 Da        Isoelectric Point: 8.5806

>NTDB_id=81212 PSm6_RS15535 WP_043243744.1 3421112..3422704(-) (pilS) [Pseudomonas solani strain Sm006]
MSAEAPALGSQPARRIFRLYNIYRLLIGLALVGLISSELDSELLDLARAQLFRNACWFYLLLNILIALMVRHPKHMLQVF
SLALVDVILLSCLFYAAGGTPSGIGNLVIVAVAIANILLRGRVGLLIAAVAAIGMIYLTFYLSLSRPEAASQYVQAGALG
ALCFAAALFVQGISKRLQLSETLAEKRAADVANLEALNALILQRMRTGILVLDPQHRVILANQGALTLLGREDLAGKVLD
PQSPELVKRLQQWLDNPTLRPQSLQAVAEGPVLQPSFVSLQRGEQRDTLIFLDDISQIAQQAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLQESDELTGPDQRLAQIIQDQSRRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFASEFRNASGPG
QTLHIETNSGTIQTRMDPHQLTQVLTNLVQNGLRYSSQKNKVGQVWLKLFRDPESDLPVLEVMDDGAGVPAEQVQHIFEP
FYTTENKGTGLGLYISRELCESNQARLDYRPRETGGSCFRITFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=81212 PSm6_RS15535 WP_043243744.1 3421112..3422704(-) (pilS) [Pseudomonas solani strain Sm006]
GTGAGCGCTGAAGCCCCCGCGCTGGGCAGCCAGCCGGCACGCCGCATCTTCCGCCTCTACAACATCTACCGCCTGCTCAT
CGGCCTGGCACTGGTGGGACTGATCTCCAGCGAGCTGGACAGCGAACTGCTCGACCTGGCCCGCGCCCAGCTGTTCCGCA
ATGCGTGCTGGTTCTACCTGCTGCTGAACATCCTCATCGCGCTGATGGTCCGCCATCCGAAACACATGCTGCAGGTCTTC
AGCCTGGCGCTGGTGGACGTGATCCTGCTGTCCTGCCTGTTCTATGCGGCGGGCGGCACGCCGAGCGGTATCGGCAACCT
GGTGATAGTTGCGGTGGCGATCGCCAACATCCTGCTGCGCGGCCGGGTCGGCTTGCTGATCGCTGCCGTCGCCGCCATCG
GCATGATCTACCTGACCTTCTACCTCAGCCTCAGCCGCCCGGAAGCCGCCAGCCAGTACGTGCAGGCCGGCGCCCTGGGT
GCCTTGTGCTTCGCCGCCGCCCTCTTCGTCCAGGGCATCAGCAAGCGCCTGCAACTGAGCGAGACCCTGGCCGAAAAACG
TGCCGCCGACGTCGCCAACCTGGAAGCGCTCAACGCCCTGATCCTGCAGCGCATGCGCACCGGCATCCTGGTGCTCGACC
CCCAGCACCGCGTAATCCTGGCCAACCAGGGTGCGCTGACGCTGCTGGGCCGCGAGGACCTGGCCGGCAAGGTCCTCGAC
CCGCAAAGCCCGGAGCTGGTGAAACGCCTTCAGCAGTGGCTGGACAACCCCACGCTGCGTCCCCAGAGCCTGCAGGCGGT
GGCCGAAGGCCCGGTGCTGCAACCGAGCTTCGTCTCCCTGCAGCGGGGCGAGCAGCGGGACACCCTGATCTTCCTCGACG
ACATCTCGCAGATCGCCCAACAGGCCCAGCAACTCAAGCTCGCCTCCCTGGGTCGCCTGACCGCCGGCATCGCCCACGAG
ATACGCAACCCACTGGGTGCCATCAGCCACGCGGCGCAGTTGCTGCAGGAATCCGATGAGCTGACCGGCCCGGACCAGCG
CCTGGCGCAGATCATCCAGGACCAGTCGCGGCGTATGAACCTGGTGATCGAGAACGTCCTGCAGCTCTCCCGCCGCCGCC
AGGCGGAGCCGCAATTGCTCGACCTGAAGTACTGGCTGCACCGCTTCGCCAGCGAATTCCGCAACGCATCCGGCCCGGGC
CAGACGCTGCACATCGAGACCAACAGCGGCACCATCCAGACCCGCATGGACCCGCACCAGCTCACCCAGGTACTGACCAA
CCTGGTACAGAACGGCCTGCGCTACAGTTCACAGAAGAACAAGGTAGGACAGGTCTGGCTGAAGCTGTTCCGCGACCCGG
AAAGCGACCTGCCCGTTCTGGAAGTGATGGATGACGGCGCCGGCGTACCCGCCGAGCAGGTGCAGCACATCTTCGAGCCC
TTCTACACCACCGAAAACAAGGGCACCGGGCTTGGCCTGTACATCTCACGGGAGCTGTGCGAGAGCAACCAGGCCCGTCT
CGACTACAGGCCCCGCGAAACCGGAGGCAGCTGCTTTCGCATAACCTTTGCCCACCCGCGCAAATTGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

PAS domain (PAS_8)

(202-253)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

65.66

100

0.657

Multiple sequence alignment