Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   P9875_RS00265 Genome accession   NZ_CP121464
Coordinates   62660..63169 (-) Length   169 a.a.
NCBI ID   WP_034781209.1    Uniprot ID   -
Organism   Janthinobacterium rivuli strain DEMB2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 57660..68169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P9875_RS00245 (P9875_00245) - 58181..59266 (-) 1086 WP_278317296.1 DUF455 family protein -
  P9875_RS00250 (P9875_00250) - 59375..60565 (-) 1191 WP_176389416.1 hypothetical protein -
  P9875_RS00255 (P9875_00255) - 60632..60856 (-) 225 WP_035823006.1 hypothetical protein -
  P9875_RS00260 (P9875_00260) - 61211..61636 (-) 426 WP_035823010.1 hypothetical protein -
  P9875_RS00265 (P9875_00265) ssb 62660..63169 (-) 510 WP_034781209.1 single-stranded DNA-binding protein Machinery gene
  P9875_RS00270 (P9875_00270) uvrA 63551..66400 (+) 2850 WP_035823012.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18092.27 Da        Isoelectric Point: 5.9466

>NTDB_id=812100 P9875_RS00265 WP_034781209.1 62660..63169(-) (ssb) [Janthinobacterium rivuli strain DEMB2]
MASVNKVIIVGNLGRDPEIRYMPSGDAIANIAVATSYKSKDRNTGEQKELTEWHRISFFGRLAEIVGQYLKKGSSVYVEG
RLQTRKYTDKDGVEKYATDIIAEQMQMLGGRSGMGGDAGGGDDSYGGGGGYEAPAPRQAPAPRPAPAPAPRPAPKPAPNF
SDMDDDIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=812100 P9875_RS00265 WP_034781209.1 62660..63169(-) (ssb) [Janthinobacterium rivuli strain DEMB2]
ATGGCATCAGTCAACAAAGTCATCATCGTCGGCAATCTGGGCCGTGACCCGGAAATCCGCTACATGCCTAGCGGCGACGC
GATCGCCAACATCGCCGTGGCCACTTCGTACAAATCGAAGGACCGCAACACGGGCGAACAAAAAGAATTGACAGAGTGGC
ACCGTATCTCGTTCTTCGGCCGCCTGGCGGAAATCGTCGGCCAATACCTGAAAAAAGGTTCGTCCGTCTACGTCGAAGGC
CGTCTGCAAACCCGTAAATACACGGACAAGGACGGCGTCGAGAAGTACGCAACCGACATCATCGCGGAACAGATGCAAAT
GCTGGGCGGCCGTTCCGGCATGGGCGGCGACGCCGGCGGTGGCGATGACAGCTACGGCGGTGGCGGCGGCTACGAAGCCC
CGGCCCCGCGCCAGGCGCCAGCCCCGCGTCCAGCCCCGGCGCCGGCGCCACGCCCGGCACCGAAGCCAGCACCGAACTTC
TCGGACATGGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

52.273

100

0.544
  ssb Glaesserella parasuis strain SC1401

49.198

100

0.544
  ssb Neisseria gonorrhoeae MS11

51.685

100

0.544
  ssb Vibrio cholerae strain A1552

50.838

100

0.538