Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PSm6_RS13650 Genome accession   NZ_AP023081
Coordinates   3014082..3014579 (+) Length   165 a.a.
NCBI ID   WP_021219615.1    Uniprot ID   -
Organism   Pseudomonas solani strain Sm006     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3009082..3019579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSm6_RS13640 (PSm6_27390) uvrA 3009634..3012468 (-) 2835 WP_021219613.1 excinuclease ABC subunit UvrA -
  PSm6_RS13645 (PSm6_27400) - 3012678..3014072 (+) 1395 WP_265170392.1 MFS transporter -
  PSm6_RS13650 (PSm6_27410) ssb 3014082..3014579 (+) 498 WP_021219615.1 single-stranded DNA-binding protein Machinery gene
  PSm6_RS13655 (PSm6_27420) - 3014826..3016160 (+) 1335 WP_265170393.1 hypothetical protein -
  PSm6_RS13660 (PSm6_27430) - 3016148..3017359 (-) 1212 WP_021219616.1 PepSY domain-containing protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18463.46 Da        Isoelectric Point: 5.3338

>NTDB_id=81210 PSm6_RS13650 WP_021219615.1 3014082..3014579(+) (ssb) [Pseudomonas solani strain Sm006]
MARGVNKVILVGNVGGDPEVRYMPNGNAVTNVTLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GTLRTREWEKDGVKRYTTEIVVDINGQMQLLGGRPGNDGDSAPRAPRPQREPQQSAPREQQQRPAPQPAAQPAPDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=81210 PSm6_RS13650 WP_021219615.1 3014082..3014579(+) (ssb) [Pseudomonas solani strain Sm006]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGCAACGTCGGTGGTGATCCCGAAGTTCGCTACATGCCCAACGGCAA
TGCCGTGACCAACGTCACCCTGGCCACCAGCGAAAGCTGGAAGGACAAGCAGACCGGCCAGCAGCAGGAACGTACCGAGT
GGCACCGCGTGGTGTTCTTTGGCCGTCTCGCCGAAATCGCCGGCGAGTACCTGCGCAAGGGCTCGCAGGTCTACGTCGAA
GGCACCCTGCGCACCCGCGAGTGGGAAAAGGACGGCGTCAAGCGCTACACCACCGAGATCGTGGTCGACATCAACGGCCA
GATGCAGCTGCTCGGCGGCCGTCCCGGCAACGATGGCGACTCCGCCCCGCGTGCCCCGCGCCCGCAGCGTGAGCCGCAAC
AGTCCGCCCCGCGCGAGCAACAGCAGCGCCCGGCTCCGCAGCCCGCCGCCCAACCGGCGCCGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.386

100

0.612
  ssb Glaesserella parasuis strain SC1401

50.276

100

0.552
  ssb Neisseria meningitidis MC58

45.81

100

0.497
  ssb Neisseria gonorrhoeae MS11

45.81

100

0.497

Multiple sequence alignment