Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   QA584_RS28630 Genome accession   NZ_CP121445
Coordinates   4508444..4508548 (-) Length   34 a.a.
NCBI ID   WP_331487679.1    Uniprot ID   -
Organism   Anaerocolumna sp. AGMB13025     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4503444..4513548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA584_RS18655 (QA584_18655) - 4503496..4504044 (-) 549 WP_278270608.1 GNAT family N-acetyltransferase -
  QA584_RS18660 (QA584_18660) - 4504481..4505278 (-) 798 WP_278270609.1 serine hydrolase -
  QA584_RS18665 (QA584_18665) - 4505356..4505865 (-) 510 WP_278270610.1 tyrosine-protein phosphatase -
  QA584_RS18670 (QA584_18670) - 4506057..4506968 (-) 912 WP_278270611.1 phosphotransferase -
  QA584_RS18675 (QA584_18675) - 4507053..4508447 (-) 1395 WP_278270612.1 hypothetical protein -
  QA584_RS28630 scnR 4508444..4508548 (-) 105 WP_331487679.1 helix-turn-helix domain-containing protein Regulator
  QA584_RS18685 (QA584_18685) - 4508955..4509461 (-) 507 WP_278270613.1 GNAT family N-acetyltransferase -
  QA584_RS18690 (QA584_18690) - 4509555..4510046 (-) 492 WP_278270614.1 NUDIX domain-containing protein -
  QA584_RS18695 (QA584_18695) - 4510138..4510470 (-) 333 WP_278270615.1 DUF1801 domain-containing protein -
  QA584_RS18700 (QA584_18700) - 4510573..4511046 (-) 474 WP_278270616.1 hypothetical protein -
  QA584_RS18705 (QA584_18705) - 4511153..4511716 (-) 564 WP_278270617.1 GNAT family protein -
  QA584_RS18710 (QA584_18710) - 4511793..4512644 (-) 852 WP_278270618.1 hypothetical protein -
  QA584_RS18715 (QA584_18715) - 4512839..4513513 (-) 675 WP_278270619.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 34 a.a.        Molecular weight: 4062.74 Da        Isoelectric Point: 7.0063

>NTDB_id=812084 QA584_RS28630 WP_331487679.1 4508444..4508548(-) (scnR) [Anaerocolumna sp. AGMB13025]
MNVHIRKLREKIEENPNEPQVIKTIWGTGYILEL

Nucleotide


Download         Length: 105 bp        

>NTDB_id=812084 QA584_RS28630 WP_331487679.1 4508444..4508548(-) (scnR) [Anaerocolumna sp. AGMB13025]
TTGAATGTACATATAAGAAAATTAAGAGAAAAGATTGAGGAGAATCCGAATGAACCCCAGGTGATAAAAACCATTTGGGG
AACCGGATATATTTTAGAGCTATGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(2-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

50

100

0.5
  micA Streptococcus pneumoniae Cp1015

46.875

94.118

0.441
  vicR Streptococcus mutans UA159

46.875

94.118

0.441
  covR Streptococcus salivarius strain HSISS4

40.625

94.118

0.382