Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   P9J63_RS00805 Genome accession   NZ_CP121375
Coordinates   157058..158188 (-) Length   376 a.a.
NCBI ID   WP_031944733.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain LRT     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 152058..163188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P9J63_RS00770 (P9J63_00770) atpD 152099..153493 (+) 1395 WP_000094481.1 F0F1 ATP synthase subunit beta -
  P9J63_RS00775 (P9J63_00775) - 153511..153930 (+) 420 WP_000224542.1 F0F1 ATP synthase subunit epsilon -
  P9J63_RS00780 (P9J63_00780) - 153992..154591 (-) 600 WP_000757144.1 hypothetical protein -
  P9J63_RS00785 (P9J63_00785) - 154737..154868 (-) 132 Protein_149 glutathione peroxidase -
  P9J63_RS00790 (P9J63_00790) - 154862..155020 (+) 159 Protein_150 TetR/AcrR family transcriptional regulator -
  P9J63_RS00795 (P9J63_00795) - 155126..156046 (+) 921 WP_001994180.1 DMT family transporter -
  P9J63_RS00800 (P9J63_00800) - 156438..157007 (-) 570 WP_000633612.1 Sua5/YciO/YrdC/YwlC family protein -
  P9J63_RS00805 (P9J63_00805) dprA 157058..158188 (-) 1131 WP_031944733.1 DNA-processing protein DprA Machinery gene
  P9J63_RS00810 (P9J63_00810) tsaP 158209..159363 (-) 1155 WP_005129904.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  P9J63_RS00815 (P9J63_00815) def 159486..160016 (+) 531 WP_001196539.1 peptide deformylase -
  P9J63_RS00820 (P9J63_00820) - 160053..160481 (+) 429 WP_000231981.1 DUF2946 family protein -
  P9J63_RS00825 (P9J63_00825) - 160553..162667 (+) 2115 WP_001120665.1 TonB-dependent copper receptor -
  P9J63_RS00830 (P9J63_00830) - 162721..162927 (+) 207 WP_000182542.1 hypothetical protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 41861.38 Da        Isoelectric Point: 6.4539

>NTDB_id=812017 P9J63_RS00805 WP_031944733.1 157058..158188(-) (dprA) [Acinetobacter baumannii strain LRT]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIIDYFGNCEKATQPDGLAKWSSLGLHANHLKRVNEFQTTQGQAQFEQLVQQV
RQHTDFILTPDDSGYPTQLLPYTDHPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFFISSGLAYG
IDEAAHQGASAHQCTIAVTGTGLDTTYPAQNKKLAEYILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILIDHPEQIIEDLALPTQWQSQQQNQTEEANTNTPEIP
EHLIDLYQSLDWVGQNIDQLVVHHNIPVSELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=812017 P9J63_RS00805 WP_031944733.1 157058..158188(-) (dprA) [Acinetobacter baumannii strain LRT]
ATGCTCACTCAACTTTCTTCACACCACTACCACACACTTAAAGTGTGGTATTTGGTGCAGCACTCTTTAGTCAGCTTTAA
AAAAATTATTGATTATTTTGGAAATTGTGAAAAAGCCACTCAACCTGATGGTTTAGCAAAGTGGTCCTCTCTGGGGCTAC
ATGCTAATCACTTAAAGCGTGTAAACGAATTTCAAACGACCCAAGGTCAGGCGCAGTTTGAACAACTTGTACAACAAGTT
CGTCAGCATACGGATTTTATTTTAACGCCAGATGACTCTGGCTATCCTACTCAATTACTTCCTTATACAGATCACCCACC
TATTATTTTTGGGAAAGGTCAAGCGCAAGCTTTATTGCAACCTCAAATTGCGATTGTCGGTAGCCGAAAACCAAGCCCAC
ATGGACGACAGGTCGCTTATGATTTTGCCTATTACTTAAGTGAAAAGGGCTTTTTCATTAGTAGCGGTCTGGCTTATGGC
ATTGATGAAGCCGCTCATCAAGGTGCATCTGCTCATCAATGTACCATTGCAGTGACGGGTACGGGCTTAGACACTACTTA
TCCAGCTCAAAATAAAAAACTTGCAGAATATATTTTGGCTCAAAACGGCGCCATTATTACTGAGTTTTTACCGGGTACAC
CGCCATTACAACAGCATTTTCCACGTAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTTTTGGTGGTAGAAGCGACA
TTAAAAAGTGGCTCACTCATCACGGCCAATAAAGCTGCTGAACAAGGTAAAACCGTATTCGCGATTCCGGGCCATATTTA
TAGCGAGTTTCATCAAGGATGCCATCAACTTATTCGTGAAGGTGCAATTTTAATCGACCATCCTGAACAGATTATTGAGG
ATCTTGCTTTACCAACCCAATGGCAAAGTCAGCAACAAAATCAAACTGAAGAAGCTAATACGAATACTCCAGAAATTCCT
GAGCATCTGATTGACCTTTATCAGTCTTTAGACTGGGTAGGACAAAATATTGACCAGCTTGTAGTTCACCATAATATTCC
AGTTTCTGAACTGACCTCTTCACTAATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGGCTGTATTTACGTT
GTCGTTCTTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(328-369)

DNA recombination-mediator protein A (DNA_processg_A)

(87-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

99.468

100

0.995
  dprA Acinetobacter baumannii strain A118

98.138

100

0.981
  dprA Acinetobacter baylyi ADP1

70.079

100

0.71
  dprA Vibrio cholerae strain A1552

43.505

88.032

0.383