Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   P0D52_RS04675 Genome accession   NZ_CP121327
Coordinates   962913..963386 (+) Length   157 a.a.
NCBI ID   WP_394694277.1    Uniprot ID   -
Organism   MAG: Hyphobacterium sp. isolate NCC532_bact_7827     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 957913..968386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P0D52_RS04660 - 957969..958949 (+) 981 WP_394694274.1 hypothetical protein -
  P0D52_RS04665 - 959020..959910 (+) 891 WP_394694275.1 hypothetical protein -
  P0D52_RS04670 uvrA 959911..962787 (-) 2877 WP_394694276.1 excinuclease ABC subunit UvrA -
  P0D52_RS04675 ssb 962913..963386 (+) 474 WP_394694277.1 single-stranded DNA-binding protein Machinery gene
  P0D52_RS04680 - 963383..964129 (+) 747 WP_394694278.1 hypothetical protein -
  P0D52_RS04685 - 964255..964995 (+) 741 WP_394694279.1 EF-hand domain-containing protein -
  P0D52_RS04690 - 965100..965888 (+) 789 WP_394694280.1 penicillin-binding transpeptidase domain-containing protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17601.30 Da        Isoelectric Point: 5.0716

>NTDB_id=811776 P0D52_RS04675 WP_394694277.1 962913..963386(+) (ssb) [MAG: Hyphobacterium sp. isolate NCC532_bact_7827]
MAGSVNKVILVGNLGADPEIRRLNSGDPVCNLRIATSESWRDKNSGERKEKTEWHNVVIFNENLAKVAENYLKKGSKVYI
EGQLQTRKWQDRDGNDKYTTEVVLQRFRGELQMLDSRGDNSGGGGYDRASNQSGGGGQVSDNRDSFRNDDMDDEIPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=811776 P0D52_RS04675 WP_394694277.1 962913..963386(+) (ssb) [MAG: Hyphobacterium sp. isolate NCC532_bact_7827]
ATGGCGGGCAGCGTCAATAAGGTCATACTTGTGGGCAATCTCGGAGCGGATCCGGAGATCCGTCGATTGAATTCCGGAGA
CCCGGTTTGCAATCTGCGTATTGCGACATCCGAGAGCTGGCGGGACAAGAATTCCGGCGAGCGCAAGGAAAAAACCGAAT
GGCATAACGTTGTGATTTTCAACGAGAACCTGGCCAAGGTTGCGGAGAACTATCTGAAAAAGGGCTCGAAGGTCTATATC
GAGGGCCAGCTTCAGACCCGCAAATGGCAGGATCGCGATGGAAATGACAAGTACACGACCGAGGTCGTGCTGCAGCGTTT
CCGCGGCGAATTGCAGATGCTGGACAGCCGGGGCGACAATTCCGGCGGCGGGGGTTATGATCGTGCCAGCAATCAATCCG
GTGGCGGCGGACAGGTGTCCGACAACCGCGACAGTTTCCGGAATGATGACATGGATGACGAGATACCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.711

100

0.548
  ssb Glaesserella parasuis strain SC1401

56.835

88.535

0.503
  ssb Neisseria gonorrhoeae MS11

48.462

82.803

0.401
  ssb Neisseria meningitidis MC58

47.692

82.803

0.395