Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   P0D56_RS19990 Genome accession   NZ_CP121320
Coordinates   4230114..4230629 (-) Length   171 a.a.
NCBI ID   WP_394689628.1    Uniprot ID   -
Organism   MAG: Hoeflea sp. isolate NCC532_bact_2428     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4225114..4235629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P0D56_RS19970 - 4228007..4228636 (+) 630 WP_394689624.1 MarC family protein -
  P0D56_RS19975 - 4228770..4229072 (+) 303 WP_394689625.1 DUF1905 domain-containing protein -
  P0D56_RS19980 - 4229069..4229497 (-) 429 WP_394689626.1 hypothetical protein -
  P0D56_RS19985 - 4229606..4230016 (-) 411 WP_394689627.1 VOC family protein -
  P0D56_RS19990 ssb 4230114..4230629 (-) 516 WP_394689628.1 single-stranded DNA-binding protein Machinery gene
  P0D56_RS19995 uvrA 4231062..4233983 (+) 2922 WP_394689629.1 excinuclease ABC subunit UvrA -
  P0D56_RS20000 - 4234009..4234464 (+) 456 WP_394689630.1 VOC family protein -
  P0D56_RS20005 - 4234526..4235326 (+) 801 WP_394689631.1 DUF72 domain-containing protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 17812.50 Da        Isoelectric Point: 5.9442

>NTDB_id=811773 P0D56_RS19990 WP_394689628.1 4230114..4230629(-) (ssb) [MAG: Hoeflea sp. isolate NCC532_bact_2428]
MAGSVNKVILIGNLGADPDIRRTQDGRPIANLSIATSESWRDKNSGERREKTEWHRVVIFNEGLCKIAENYLKKGSKVYI
EGALQTRKWTDQSGQDKYSTEVVLQGFNGNLTMLDGRNEGGGGGRDFGGGDYGGGGSIPSGGGGGRGPSGSGGGFGGGGG
GSRDLDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=811773 P0D56_RS19990 WP_394689628.1 4230114..4230629(-) (ssb) [MAG: Hoeflea sp. isolate NCC532_bact_2428]
ATGGCGGGAAGCGTCAACAAGGTCATTCTCATCGGCAATCTGGGCGCTGATCCGGACATCAGGCGCACCCAGGATGGCCG
ACCGATCGCCAATCTGTCGATTGCGACCTCGGAAAGCTGGCGCGACAAGAATTCCGGCGAGCGCCGCGAGAAAACCGAAT
GGCACAGGGTCGTCATTTTCAATGAAGGCCTGTGCAAGATTGCCGAGAACTACCTCAAGAAGGGCTCGAAGGTTTATATC
GAGGGCGCACTTCAAACCCGCAAATGGACCGACCAGTCGGGCCAGGACAAATATTCCACCGAAGTCGTACTGCAGGGGTT
CAACGGCAACCTCACCATGCTTGACGGCCGCAATGAAGGCGGCGGCGGTGGCCGCGACTTTGGCGGCGGTGATTATGGCG
GCGGCGGTTCGATCCCGTCCGGTGGCGGCGGTGGCCGAGGGCCCTCCGGTAGTGGCGGCGGATTTGGCGGCGGCGGTGGT
GGCTCCCGCGATCTGGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

45.596

100

0.515
  ssb Vibrio cholerae strain A1552

48.889

100

0.515
  ssb Neisseria gonorrhoeae MS11

37.989

100

0.398
  ssb Neisseria meningitidis MC58

36.872

100

0.386