Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   P8632_RS11790 Genome accession   NZ_CP121263
Coordinates   2321079..2321597 (-) Length   172 a.a.
NCBI ID   WP_002454532.1    Uniprot ID   -
Organism   Staphylococcus hominis strain FSEL1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2316079..2326597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8632_RS11765 (P8632_11755) - 2317553..2318182 (+) 630 WP_002447997.1 NDxxF motif lipoprotein -
  P8632_RS11770 (P8632_11760) - 2318280..2318858 (-) 579 WP_002454530.1 histidine phosphatase family protein -
  P8632_RS11775 (P8632_11765) - 2319137..2319385 (-) 249 WP_002447983.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  P8632_RS11780 (P8632_11770) - 2319666..2320610 (-) 945 WP_037554212.1 hypothetical protein -
  P8632_RS11785 (P8632_11775) rpsR 2320794..2321036 (-) 243 WP_002447994.1 30S ribosomal protein S18 -
  P8632_RS11790 (P8632_11780) ssbA 2321079..2321597 (-) 519 WP_002454532.1 single-stranded DNA-binding protein Machinery gene
  P8632_RS11795 (P8632_11785) rpsF 2321619..2321915 (-) 297 WP_002447961.1 30S ribosomal protein S6 -
  P8632_RS11800 (P8632_11790) - 2322163..2322354 (+) 192 WP_002447995.1 hypothetical protein -
  P8632_RS11805 (P8632_11795) ychF 2322423..2323520 (-) 1098 WP_002447976.1 redox-regulated ATPase YchF -
  P8632_RS11810 (P8632_11800) - 2323532..2323735 (-) 204 WP_002454533.1 DUF951 domain-containing protein -
  P8632_RS11815 (P8632_11805) - 2323756..2324634 (-) 879 WP_002454534.1 mechanosensitive ion channel family protein -
  P8632_RS11820 (P8632_11810) - 2324765..2325589 (-) 825 WP_002454535.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18932.40 Da        Isoelectric Point: 4.7306

>NTDB_id=811474 P8632_RS11790 WP_002454532.1 2321079..2321597(-) (ssbA) [Staphylococcus hominis strain FSEL1]
MINRVVLVGRLTKDPEYRSTPSGVSVATFTLAVNRTFTNAQGEREADFINVVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVADSVQFLEPKNAQGGQRNQGNNDFQDYGQGFGGSQSGQNTSYNNNNNNRASNNNQSDNPFANAN
GPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=811474 P8632_RS11790 WP_002454532.1 2321079..2321597(-) (ssbA) [Staphylococcus hominis strain FSEL1]
ATGATAAATCGAGTTGTATTAGTAGGTCGTTTAACTAAGGATCCAGAATACAGAAGTACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAACCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTTATTAACGTTGTTGTAT
TTAGAAGGCAAGCAGAAAACGTAAATAACTATCTTTCAAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAATCACGC
AGTTATGAAAATCAAGAAGGTCGTCGTATATTTGTCACTGAAGTTGTAGCGGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCACAAGGTGGACAACGTAATCAAGGAAATAATGATTTCCAAGATTACGGCCAAGGATTTGGTGGTTCGCAATCAGGAC
AAAATACATCTTATAATAATAATAATAACAATCGTGCATCAAATAATAATCAATCAGATAACCCATTTGCAAATGCGAAT
GGTCCAATTGATATTAGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.536

100

0.669
  ssb Latilactobacillus sakei subsp. sakei 23K

55.747

100

0.564
  ssb Glaesserella parasuis strain SC1401

34.043

100

0.372
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

61.628

0.372