Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RS168_RS15565 Genome accession   NZ_CP135658
Coordinates   3158284..3158820 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain TUM10008     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3153284..3163820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS168_RS15545 (RS168_15545) aphA 3153572..3154285 (+) 714 WP_098704182.1 acid phosphatase AphA -
  RS168_RS15550 (RS168_15550) yjbQ 3154396..3154812 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  RS168_RS15555 (RS168_15555) yjbR 3154816..3155172 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  RS168_RS15560 (RS168_15560) uvrA 3155207..3158029 (-) 2823 WP_000357744.1 excinuclease ABC subunit UvrA Machinery gene
  RS168_RS15565 (RS168_15565) ssb 3158284..3158820 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  RS168_RS15570 (RS168_15570) yjcB 3158919..3159200 (-) 282 WP_001295689.1 YjcB family protein -
  RS168_RS15575 (RS168_15575) pdeC 3159630..3161216 (+) 1587 WP_000019548.1 c-di-GMP phosphodiesterase PdeC -
  RS168_RS15580 (RS168_15580) soxS 3161219..3161542 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  RS168_RS15585 (RS168_15585) soxR 3161628..3162092 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=811325 RS168_RS15565 WP_000168305.1 3158284..3158820(+) (ssb) [Escherichia coli strain TUM10008]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=811325 RS168_RS15565 WP_000168305.1 3158284..3158820(+) (ssb) [Escherichia coli strain TUM10008]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489