Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   P7Y79_RS01715 Genome accession   NZ_CP121207
Coordinates   364639..365331 (+) Length   230 a.a.
NCBI ID   WP_006532917.1    Uniprot ID   A0A380KNN3
Organism   Streptococcus ruminicola strain CNU_77-47     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 359639..370331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7Y79_RS01690 (P7Y79_01690) - 359711..361084 (-) 1374 WP_278007618.1 potassium transporter TrkG -
  P7Y79_RS01695 (P7Y79_01695) rsmG 361160..361873 (-) 714 WP_278007619.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  P7Y79_RS01700 (P7Y79_01700) - 362163..362714 (+) 552 WP_014335211.1 LemA family protein -
  P7Y79_RS01705 (P7Y79_01705) htpX 362822..363721 (+) 900 WP_278007620.1 zinc metalloprotease HtpX -
  P7Y79_RS01710 (P7Y79_01710) - 363863..364399 (+) 537 WP_278007621.1 YceD family protein -
  P7Y79_RS01715 (P7Y79_01715) covR 364639..365331 (+) 693 WP_006532917.1 response regulator transcription factor Regulator
  P7Y79_RS01720 (P7Y79_01720) - 365436..366818 (+) 1383 WP_238385866.1 ATP-binding protein -
  P7Y79_RS01725 (P7Y79_01725) nrdR 366977..367471 (+) 495 WP_278007622.1 transcriptional regulator NrdR -
  P7Y79_RS01730 (P7Y79_01730) - 367458..368609 (+) 1152 WP_278007623.1 DnaD domain protein -
  P7Y79_RS01735 (P7Y79_01735) dnaI 368620..369522 (+) 903 WP_074560813.1 primosomal protein DnaI -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 26400.31 Da        Isoelectric Point: 4.7654

>NTDB_id=811083 P7Y79_RS01715 WP_006532917.1 364639..365331(+) (covR) [Streptococcus ruminicola strain CNU_77-47]
MSKKILIIEDEKNLARFVSLELQHEGYSVVVETNGRLGLQTALDDDFDLILLDLMLPDMDGFEITRRLRLEKDTSIIMMT
ARDSIMDIVAGLDRGADDYIVKPFAIEELLARVRAVFRRQDANSKQDKEGQAKEGLLGLRLNPQNRSAVRGDDEISLTKR
EYDLLSVLLSNVNRVMTREELLASVWRYDTDIETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYIIREK

Nucleotide


Download         Length: 693 bp        

>NTDB_id=811083 P7Y79_RS01715 WP_006532917.1 364639..365331(+) (covR) [Streptococcus ruminicola strain CNU_77-47]
ATGAGTAAAAAGATTTTAATTATTGAGGATGAAAAAAATCTTGCACGCTTTGTGTCTTTAGAATTACAACATGAGGGGTA
TTCAGTAGTTGTTGAGACAAATGGACGTTTAGGGCTTCAAACTGCATTGGATGATGATTTTGATTTGATCCTATTAGATT
TGATGTTACCTGATATGGACGGATTCGAAATTACACGTCGTCTTCGTTTGGAAAAAGACACTTCAATTATCATGATGACT
GCTCGTGATTCTATTATGGATATTGTTGCTGGTCTTGACCGTGGAGCAGATGATTACATTGTAAAACCATTTGCTATTGA
AGAATTACTCGCTCGTGTTCGTGCAGTATTCCGTCGTCAAGATGCTAATTCTAAACAAGACAAAGAAGGTCAAGCAAAAG
AAGGTCTCTTAGGTCTTCGTTTGAACCCACAAAATCGTTCTGCAGTGCGTGGTGATGATGAAATTTCATTAACAAAACGT
GAATACGATTTGTTGAGCGTGCTTCTTTCAAATGTTAATCGCGTAATGACACGTGAAGAACTTTTGGCAAGTGTTTGGCG
TTATGATACAGACATCGAAACAAATGTCGTGGATGTTTACATCCGTTACCTACGTGGTAAAATTGATATTCCTGGTAAAG
AATCATATATCCAAACAGTTCGTGGAATGGGTTATATTATTCGAGAAAAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(153-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380KNN3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

76.087

100

0.761
  covR Lactococcus lactis subsp. lactis strain DGCC12653

64.192

99.565

0.639
  micA Streptococcus pneumoniae Cp1015

41.739

100

0.417
  vicR Streptococcus mutans UA159

41.558

100

0.417