Detailed information NTG0810996

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: RS172_RS21995
• Genome accession: NZ_CP135646
• Coordinates: 4561488..4562513 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644908.1
• Uniprot ID: -
• Organism: Escherichia coli strain TUM14668
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4556488..4567513

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RS172_RS21975 (RS172_21975)	metJ	4557673..4557990 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
RS172_RS21980 (RS172_21980)	yiiX	4558050..4558658 (+)	609	WP_000702314.1	YiiX family permuted papain-like enzyme	-
RS172_RS21985 (RS172_21985)	rpmE	4558719..4558931 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
RS172_RS21990 (RS172_21990)	priA	4559134..4561332 (+)	2199	WP_001296625.1	primosomal protein N'	Machinery gene
RS172_RS21995 (RS172_21995)	cytR	4561488..4562513 (+)	1026	WP_000644908.1	DNA-binding transcriptional regulator CytR	Regulator
RS172_RS22000 (RS172_22000)	ftsN	4562605..4563564 (+)	960	WP_000068834.1	cell division protein FtsN	-
RS172_RS22005 (RS172_22005)	hslV	4563657..4564187 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
RS172_RS22010 (RS172_22010)	hslU	4564197..4565528 (+)	1332	WP_001293344.1	HslU--HslV peptidase ATPase subunit	-
RS172_RS22015 (RS172_22015)	menA	4565595..4566521 (+)	927	WP_001305044.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
RS172_RS22020 (RS172_22020)	rraA	4566614..4567099 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
RS172_RS22025 (RS172_22025)	zapB	4567184..4567429 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37847.80 Da
• Isoelectric Point: 6.3842

>NTDB_id=810996 RS172_RS21995 WP_000644908.1 4561488..4562513(+) (cytR) [Escherichia coli strain TUM14668]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSRAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=810996 RS172_RS21995 WP_000644908.1 4561488..4562513(+) (cytR) [Escherichia coli strain TUM14668]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGACCCT
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAGAGCAATGCAACAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGTCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	63.881	98.24	0.628
cytR	Vibrio cholerae C6706	65.138	95.894	0.625