Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   P8934_RS16710 Genome accession   NZ_CP121193
Coordinates   3542144..3542740 (-) Length   198 a.a.
NCBI ID   WP_278032020.1    Uniprot ID   -
Organism   Halomonas sp. CKK8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3537144..3547740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8934_RS16685 (P8934_16685) - 3537998..3538525 (+) 528 WP_278032016.1 DUF2878 domain-containing protein -
  P8934_RS16690 (P8934_16690) fabA 3538651..3539166 (+) 516 WP_040183089.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -
  P8934_RS16695 (P8934_16695) fabB 3539180..3540397 (+) 1218 WP_278032017.1 beta-ketoacyl-ACP synthase I -
  P8934_RS16700 (P8934_16700) - 3540471..3541232 (-) 762 WP_278032018.1 lysophospholipid acyltransferase family protein -
  P8934_RS16705 (P8934_16705) - 3541229..3542119 (-) 891 WP_278032019.1 sugar nucleotide-binding protein -
  P8934_RS16710 (P8934_16710) ssb 3542144..3542740 (-) 597 WP_278032020.1 single-stranded DNA-binding protein Machinery gene
  P8934_RS16715 (P8934_16715) - 3542788..3544182 (-) 1395 WP_278032021.1 MFS transporter -
  P8934_RS16720 (P8934_16720) uvrA 3544343..3547204 (+) 2862 WP_278032022.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21310.27 Da        Isoelectric Point: 4.9363

>NTDB_id=810904 P8934_RS16710 WP_278032020.1 3542144..3542740(-) (ssb) [Halomonas sp. CKK8]
MARGVNKVILIGNLGQDPEVRFTPSGTAVANLNLATTDTWMDKQSGQRQERTEWHRIVLFNKTAEIAQQYLKKGSKVYIE
GRLQTRKWQDQNGQDKYTTEIVANDMQMLDSRGGDFGGQQGGQYGGQPQQGGNFGGPAPQQGGYGNAPPQGGNFGGGQPQ
RPAPQPAPPQQGGGQQQGGNYGAPDPGSFDDFDDEIPF

Nucleotide


Download         Length: 597 bp        

>NTDB_id=810904 P8934_RS16710 WP_278032020.1 3542144..3542740(-) (ssb) [Halomonas sp. CKK8]
ATGGCCCGTGGCGTCAACAAGGTCATCCTCATCGGCAACCTCGGCCAGGATCCGGAGGTGCGCTTCACGCCCTCCGGCAC
CGCCGTCGCCAACCTCAACCTGGCCACCACCGATACCTGGATGGACAAGCAGAGCGGCCAGCGCCAGGAGCGCACCGAGT
GGCATCGGATCGTGCTGTTCAACAAGACCGCCGAGATCGCCCAGCAGTACCTCAAGAAGGGCAGCAAGGTGTATATCGAG
GGTCGCCTGCAGACCCGCAAGTGGCAGGACCAGAACGGCCAGGACAAGTACACCACCGAGATCGTCGCCAACGACATGCA
GATGCTCGACTCCCGCGGCGGCGACTTCGGCGGCCAGCAGGGGGGACAGTACGGCGGCCAGCCCCAGCAGGGCGGTAACT
TCGGCGGCCCGGCGCCCCAGCAGGGCGGCTACGGCAACGCCCCGCCGCAGGGCGGCAACTTCGGTGGCGGCCAGCCCCAG
CGTCCGGCCCCGCAGCCGGCCCCCCCGCAGCAGGGTGGCGGCCAGCAGCAGGGCGGCAACTATGGTGCCCCGGACCCGGG
CAGCTTCGACGATTTCGATGACGAGATCCCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.96

100

0.551
  ssb Glaesserella parasuis strain SC1401

53.807

99.495

0.535
  ssb Neisseria meningitidis MC58

42.857

98.99

0.424
  ssb Neisseria gonorrhoeae MS11

42.857

98.99

0.424