Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   P8F83_RS18550 Genome accession   NZ_CP121166
Coordinates   3623213..3623662 (-) Length   149 a.a.
NCBI ID   WP_326512224.1    Uniprot ID   -
Organism   Clostridium intestinale strain PC17     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3618213..3628662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8F83_RS18530 (P8F83_18530) rplI 3619995..3620441 (-) 447 WP_021804019.1 50S ribosomal protein L9 -
  P8F83_RS18535 (P8F83_18535) - 3620443..3622401 (-) 1959 WP_326512223.1 DHH family phosphoesterase -
  P8F83_RS18540 (P8F83_18540) - 3622501..3622815 (-) 315 WP_021804017.1 MazG-like family protein -
  P8F83_RS18545 (P8F83_18545) rpsR 3622944..3623189 (-) 246 WP_021804016.1 30S ribosomal protein S18 -
  P8F83_RS18550 (P8F83_18550) ssbA 3623213..3623662 (-) 450 WP_326512224.1 single-stranded DNA-binding protein Machinery gene
  P8F83_RS18555 (P8F83_18555) rpsF 3623676..3623963 (-) 288 WP_073021255.1 30S ribosomal protein S6 -
  P8F83_RS18560 (P8F83_18560) - 3624069..3624275 (-) 207 WP_073021257.1 DUF951 domain-containing protein -
  P8F83_RS18565 (P8F83_18565) - 3624291..3625187 (-) 897 WP_326512225.1 mechanosensitive ion channel family protein -
  P8F83_RS18570 (P8F83_18570) ytvI 3625464..3626522 (+) 1059 WP_073021261.1 sporulation integral membrane protein YtvI -
  P8F83_RS18575 (P8F83_18575) yyaC 3626574..3627158 (+) 585 WP_315114646.1 spore protease YyaC -
  P8F83_RS18580 (P8F83_18580) - 3627166..3627408 (-) 243 WP_315114644.1 hypothetical protein -
  P8F83_RS18585 (P8F83_18585) - 3627466..3627966 (-) 501 WP_073021271.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16042.71 Da        Isoelectric Point: 4.8779

>NTDB_id=810786 P8F83_RS18550 WP_326512224.1 3623213..3623662(-) (ssbA) [Clostridium intestinale strain PC17]
MNKVVLIGRLTKDPELKFTPGNGTAVTTVTLAVDKYNSSTGQREADFISVTIWGKQAESTANYMSKGSLMAISGRIQTRS
YDAKDGTKRYVTEVVANEVSFLSKSNSSSNGRNNGFNNGSEYNAPQDTFGGGMSFAEDMTPVDDGDIPF

Nucleotide


Download         Length: 450 bp        

>NTDB_id=810786 P8F83_RS18550 WP_326512224.1 3623213..3623662(-) (ssbA) [Clostridium intestinale strain PC17]
ATGAATAAAGTAGTTCTAATAGGCAGACTTACTAAAGATCCTGAGTTAAAGTTTACTCCAGGAAATGGTACTGCAGTAAC
CACTGTAACTCTAGCAGTTGATAAGTATAATTCTTCAACTGGACAAAGAGAAGCGGACTTTATCTCAGTAACAATATGGG
GTAAACAAGCGGAATCTACGGCTAATTACATGAGCAAAGGAAGCTTAATGGCTATTAGCGGTAGAATACAAACTAGATCT
TATGATGCTAAAGATGGAACCAAGAGATATGTTACAGAAGTTGTTGCTAATGAAGTAAGCTTCTTGAGCAAATCTAATTC
TTCTTCAAATGGAAGAAACAATGGTTTCAACAATGGTTCTGAATATAATGCGCCACAAGATACATTCGGTGGTGGAATGA
GCTTTGCAGAGGATATGACTCCTGTAGATGATGGAGACATTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

41.86

100

0.483
  ssb Latilactobacillus sakei subsp. sakei 23K

38.824

100

0.443
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.957

77.181

0.362
  ssbB Bacillus subtilis subsp. subtilis str. 168

52.941

68.456

0.362