Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   P8R99_RS09720 Genome accession   NZ_CP121160
Coordinates   1852305..1852796 (+) Length   163 a.a.
NCBI ID   WP_000609584.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain S5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1847305..1857796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8R99_RS09695 - 1848077..1848577 (+) 501 WP_000446807.1 phosphatase PAP2 family protein -
  P8R99_RS09700 trxA 1848658..1848972 (+) 315 WP_001162959.1 thioredoxin -
  P8R99_RS09705 - 1849018..1849611 (-) 594 WP_000402388.1 helix-turn-helix transcriptional regulator -
  P8R99_RS09710 mutY 1849788..1850942 (-) 1155 WP_161508544.1 A/G-specific adenine glycosylase -
  P8R99_RS09715 rpsF 1852006..1852293 (+) 288 WP_001151773.1 30S ribosomal protein S6 -
  P8R99_RS09720 ssbA 1852305..1852796 (+) 492 WP_000609584.1 single-stranded DNA-binding protein Machinery gene
  P8R99_RS09725 rpsR 1852841..1853080 (+) 240 WP_000068665.1 30S ribosomal protein S18 -
  P8R99_RS09730 - 1853250..1854194 (+) 945 WP_000812124.1 magnesium transporter CorA family protein -
  P8R99_RS09735 - 1854219..1854890 (+) 672 WP_000174846.1 DUF1129 family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18175.85 Da        Isoelectric Point: 4.9119

>NTDB_id=810694 P8R99_RS09720 WP_000609584.1 1852305..1852796(+) (ssbA) [Streptococcus agalactiae strain S5]
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQSGEREADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVAESFQLLESRATREGGSPNSYNNGGYNNAPSNNSYSAPSQQTPNFSRDESPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=810694 P8R99_RS09720 WP_000609584.1 1852305..1852796(+) (ssbA) [Streptococcus agalactiae strain S5]
ATGATTAATAATGTAGTACTTGTAGGTCGCATGACCCGTGATGCAGAACTTCGTTATACACCAAGTAATCAAGCGGTAGC
CACTTTTTCACTTGCAGTTAATCGTAATTTTAAAAATCAATCTGGCGAACGTGAGGCTGATTTTATTAACTGTGTTATTT
GGCGCCAACAAGCTGAAAACTTGGCTAACTGGGCAAAAAAAGGTGCTTTGGTTGGAATTACAGGTCGTATCCAAACACGT
AATTATGAAAACCAACAAGGTCAACGTGTCTATGTAACAGAAGTTGTTGCGGAAAGTTTCCAATTATTGGAAAGTCGTGC
TACACGAGAAGGTGGTTCACCTAACTCTTATAATAACGGTGGCTATAACAATGCTCCGTCAAATAATAGTTATTCAGCTC
CTTCTCAACAAACACCTAATTTTAGTCGTGATGAGAGTCCGTTTGGTAACTCAAATCCAATGGATATTTCAGATGATGAT
CTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.714

100

0.62
  ssb Latilactobacillus sakei subsp. sakei 23K

59.064

100

0.62
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.963

66.871

0.374
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368