Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   P8R99_RS09075 Genome accession   NZ_CP121160
Coordinates   1715984..1716916 (+) Length   310 a.a.
NCBI ID   WP_000138506.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain S5     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1710984..1721916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8R99_RS09055 - 1711196..1712851 (+) 1656 WP_278043277.1 peptide ABC transporter substrate-binding protein -
  P8R99_RS09060 - 1712970..1713884 (+) 915 WP_000598968.1 ABC transporter permease -
  P8R99_RS09065 - 1713894..1714925 (+) 1032 WP_000764052.1 ABC transporter permease -
  P8R99_RS09070 oppD 1714938..1715984 (+) 1047 WP_000410286.1 ABC transporter ATP-binding protein Regulator
  P8R99_RS09075 amiF 1715984..1716916 (+) 933 WP_000138506.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 310 a.a.        Molecular weight: 34855.67 Da        Isoelectric Point: 6.7314

>NTDB_id=810684 P8R99_RS09075 WP_000138506.1 1715984..1716916(+) (amiF) [Streptococcus agalactiae strain S5]
MTENRKKLVEVKNVSLTFNKGKANEVRAIDNVSFDIYEGEVFGLVGESGSGKTTVGRSILKLYDISDGEITFNGEVISHL
KGKALHSFRKDAQMIFQDPQASLNGRMKIRDIVAEGLDIHKLAKSKSDRDSKVQALLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVEPKFIIADEPISALDVSIQAQVVNLMQKLQREQGLTYLFIAHDLSMVKYISDRIGVMHWGKLLEVGTSDD
VYNNPIHPYTKSLLSAIPEPDPESERQRVHQPYNPAIEQDGQERQMHEITPGHFVLSTPQEAEEYKKQIL

Nucleotide


Download         Length: 933 bp        

>NTDB_id=810684 P8R99_RS09075 WP_000138506.1 1715984..1716916(+) (amiF) [Streptococcus agalactiae strain S5]
ATGACTGAAAATCGAAAAAAATTAGTTGAAGTCAAAAATGTTTCTTTGACCTTCAATAAAGGAAAAGCTAATGAAGTGAG
AGCAATTGATAATGTTAGTTTTGACATTTATGAAGGTGAAGTGTTTGGATTAGTTGGGGAATCTGGATCAGGAAAGACAA
CCGTTGGACGTTCAATTTTAAAACTTTATGATATTTCTGATGGAGAAATTACCTTTAATGGAGAAGTGATCTCACATCTG
AAAGGTAAAGCATTACATAGTTTTCGTAAAGACGCTCAGATGATTTTTCAGGATCCTCAGGCTAGCTTAAACGGCCGTAT
GAAGATTCGTGATATCGTAGCAGAAGGTTTAGATATACATAAATTAGCTAAATCAAAATCAGATCGTGATAGTAAAGTTC
AGGCCCTATTAGATCTTGTAGGGTTAAATAAAGATCATTTAACACGTTATCCGCATGAATTTTCAGGTGGACAACGACAA
CGTATCGGGATTGCACGTGCTTTAGCAGTAGAGCCTAAATTTATCATTGCTGATGAACCAATATCTGCCTTAGATGTTTC
AATCCAAGCACAAGTTGTTAATTTAATGCAAAAATTGCAAAGAGAACAAGGATTGACTTATTTGTTTATCGCACATGATT
TGTCTATGGTAAAATACATTTCAGATCGTATCGGTGTTATGCATTGGGGGAAACTGTTAGAAGTTGGAACATCTGATGAT
GTTTATAACAATCCAATCCACCCTTATACGAAGAGTCTATTATCAGCTATTCCAGAACCAGATCCGGAGAGTGAACGTCA
ACGTGTTCACCAGCCGTATAATCCAGCTATTGAGCAAGACGGACAAGAACGTCAAATGCACGAGATTACCCCTGGTCATT
TTGTTTTATCTACACCCCAAGAAGCTGAAGAATATAAAAAACAAATATTATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-267)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

54.545

99.355

0.542
  amiF Streptococcus thermophilus LMG 18311

54.221

99.355

0.539
  amiF Streptococcus salivarius strain HSISS4

54.426

98.387

0.535