Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   P8R98_RS03295 Genome accession   NZ_CP121159
Coordinates   633511..634002 (+) Length   163 a.a.
NCBI ID   WP_000609586.1    Uniprot ID   A0AAD2WUV1
Organism   Streptococcus agalactiae strain S1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 628511..639002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8R98_RS03270 - 629286..629786 (+) 501 WP_000446812.1 phosphatase PAP2 family protein -
  P8R98_RS03275 trxA 629867..630181 (+) 315 WP_001162959.1 thioredoxin -
  P8R98_RS03280 - 630227..630820 (-) 594 WP_000402389.1 helix-turn-helix transcriptional regulator -
  P8R98_RS03285 mutY 630997..632151 (-) 1155 WP_001873268.1 A/G-specific adenine glycosylase -
  P8R98_RS03290 rpsF 633212..633499 (+) 288 WP_001151773.1 30S ribosomal protein S6 -
  P8R98_RS03295 ssb 633511..634002 (+) 492 WP_000609586.1 single-stranded DNA-binding protein Machinery gene
  P8R98_RS03300 rpsR 634047..634286 (+) 240 WP_000068665.1 30S ribosomal protein S18 -
  P8R98_RS03305 - 634456..635400 (+) 945 WP_000812121.1 magnesium transporter CorA family protein -
  P8R98_RS03310 - 635425..636096 (+) 672 WP_000174846.1 DUF1129 family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18155.77 Da        Isoelectric Point: 4.9119

>NTDB_id=810608 P8R98_RS03295 WP_000609586.1 633511..634002(+) (ssb) [Streptococcus agalactiae strain S1]
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQSGEREADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVAESFQLLESRATREGGSSNSYNNGGYNNAPSNNSYSASSQQTPNFSRDESPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=810608 P8R98_RS03295 WP_000609586.1 633511..634002(+) (ssb) [Streptococcus agalactiae strain S1]
ATGATTAATAATGTAGTACTTGTAGGTCGCATGACCCGTGATGCAGAACTTCGTTATACACCAAGTAATCAAGCGGTAGC
CACTTTTTCACTTGCAGTTAATCGTAATTTTAAAAATCAATCTGGCGAACGTGAGGCTGATTTTATTAACTGTGTTATTT
GGCGCCAACAAGCTGAAAACTTGGCTAACTGGGCAAAAAAAGGTGCTTTGGTTGGAATTACAGGTCGTATCCAAACACGT
AATTATGAAAACCAACAAGGTCAACGTGTCTATGTAACAGAAGTTGTTGCGGAAAGTTTCCAATTATTGGAAAGTCGTGC
TACACGAGAAGGTGGTTCATCTAACTCTTATAATAACGGTGGCTATAACAATGCTCCGTCAAATAATAGTTATTCAGCTT
CTTCTCAACAAACGCCTAATTTTAGTCGTGATGAGAGTCCGTTTGGTAACTCAAATCCAATGGATATTTCAGATGATGAT
CTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.465

100

0.638
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.286

100

0.626
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.963

66.871

0.374
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368