Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ROT04_RS03535 Genome accession   NZ_CP135174
Coordinates   732632..733129 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain PARM_L1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 727632..738129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ROT04_RS03520 (ROT04_03520) bfr 727640..728104 (+) 465 WP_003093668.1 bacterioferritin -
  ROT04_RS03525 (ROT04_03525) uvrA 728176..731013 (-) 2838 WP_023127008.1 excinuclease ABC subunit UvrA Machinery gene
  ROT04_RS03530 (ROT04_03530) - 731227..732615 (+) 1389 WP_009316331.1 MFS transporter -
  ROT04_RS03535 (ROT04_03535) ssb 732632..733129 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  ROT04_RS03540 (ROT04_03540) pchA 733218..734648 (-) 1431 WP_058354993.1 isochorismate synthase PchA -
  ROT04_RS03545 (ROT04_03545) pchB 734645..734950 (-) 306 WP_003106950.1 isochorismate lyase PchB -
  ROT04_RS03550 (ROT04_03550) pchC 734950..735705 (-) 756 WP_023435682.1 pyochelin biosynthesis editing thioesterase PchC -
  ROT04_RS03555 (ROT04_03555) pchD 735702..737345 (-) 1644 WP_058354994.1 pyochelin biosynthesis salicyl-AMP ligase PchD -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=810332 ROT04_RS03535 WP_003114685.1 732632..733129(+) (ssb) [Pseudomonas aeruginosa strain PARM_L1]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=810332 ROT04_RS03535 WP_003114685.1 732632..733129(+) (ssb) [Pseudomonas aeruginosa strain PARM_L1]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATTAACGG
CAACATGCAACTGCTCGGCGGCCGCCCCTCCGGCGACGACTCGCAGCGTGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAGCCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515