Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   P8S54_RS12075 Genome accession   NZ_CP121119
Coordinates   2618499..2619182 (+) Length   227 a.a.
NCBI ID   WP_281441949.1    Uniprot ID   A0AAX3S4T6
Organism   Halomonas sp. M1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2613499..2624182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8S54_RS12065 (P8S55_12030) uvrA 2613997..2616846 (-) 2850 WP_281441948.1 excinuclease ABC subunit UvrA -
  P8S54_RS12070 (P8S55_12035) - 2617017..2618396 (+) 1380 WP_009097710.1 MFS transporter -
  P8S54_RS12075 (P8S55_12040) ssb 2618499..2619182 (+) 684 WP_281441949.1 single-stranded DNA-binding protein Machinery gene
  P8S54_RS12080 (P8S55_12045) - 2619230..2620120 (+) 891 WP_281441950.1 sugar nucleotide-binding protein -
  P8S54_RS12085 (P8S55_12050) - 2620117..2620851 (+) 735 WP_009097704.1 lysophospholipid acyltransferase family protein -
  P8S54_RS12090 (P8S55_12055) fabB 2620960..2622177 (-) 1218 WP_281441951.1 beta-ketoacyl-ACP synthase I -
  P8S54_RS12095 (P8S55_12060) fabA 2622190..2622705 (-) 516 WP_009097700.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24688.68 Da        Isoelectric Point: 5.2221

>NTDB_id=810216 P8S54_RS12075 WP_281441949.1 2618499..2619182(+) (ssb) [Halomonas sp. M1]
MARGINKVILIGNLGQDPEVRFTPSGTAVANLNLATSDTWMDRQSGQRQERTEWHRIVLFNKTAEIAQQYLKKGAKVYIE
GRLQTRKWQDQNGQDRYSTEIVANDMQMLDGRSGDFQGGGAPQGNYSQGNNPQNNYAQNNAAQGGQPQNAPAQHAPAQNS
YGQGNPGQTPPAQNAPQQPGGYPQQGGAQRSPQPAPQQNQPAPANQNSNYGAPDPGNFDDFDDEIPF

Nucleotide


Download         Length: 684 bp        

>NTDB_id=810216 P8S54_RS12075 WP_281441949.1 2618499..2619182(+) (ssb) [Halomonas sp. M1]
ATGGCGCGCGGAATTAACAAAGTCATTTTGATTGGCAACCTGGGGCAAGACCCAGAAGTACGTTTTACCCCGTCGGGCAC
CGCCGTGGCTAACTTGAACCTTGCGACCTCCGACACCTGGATGGACCGTCAGAGTGGTCAGCGACAAGAGCGTACCGAGT
GGCACCGCATTGTGCTGTTCAATAAAACTGCCGAGATTGCCCAGCAGTATTTGAAAAAAGGCGCCAAGGTCTACATTGAA
GGCCGCCTGCAAACCCGTAAGTGGCAAGACCAGAATGGTCAGGACCGTTACAGCACTGAAATTGTTGCCAATGACATGCA
GATGCTTGATGGCCGCAGTGGCGACTTCCAAGGCGGCGGTGCGCCACAGGGTAATTACTCTCAAGGGAATAATCCCCAGA
ATAACTATGCCCAGAATAACGCCGCACAGGGTGGGCAGCCCCAAAACGCCCCGGCTCAACATGCCCCTGCGCAAAACAGC
TATGGGCAAGGCAACCCAGGTCAGACGCCGCCTGCTCAAAACGCGCCTCAGCAGCCGGGTGGTTACCCACAGCAGGGCGG
CGCCCAGCGTAGCCCGCAGCCTGCTCCGCAGCAAAATCAGCCTGCCCCCGCCAACCAAAACAGCAACTACGGCGCGCCTG
ATCCAGGTAACTTCGACGATTTTGACGACGAAATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.261

100

0.489
  ssb Neisseria meningitidis MC58

45.291

98.238

0.445
  ssb Neisseria gonorrhoeae MS11

45.291

98.238

0.445
  ssb Glaesserella parasuis strain SC1401

57.831

73.128

0.423