Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ/pilQ   Type   Machinery gene
Locus tag   RO838_RS09605 Genome accession   NZ_CP135134
Coordinates   2077091..2079004 (-) Length   637 a.a.
NCBI ID   WP_057682736.1    Uniprot ID   -
Organism   Xylella fastidiosa strain CFBP8478     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2072091..2084004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RO838_RS09595 (RO838_09595) - 2073288..2074907 (-) 1620 WP_235443654.1 phosphoethanolamine transferase -
  RO838_RS09600 (RO838_09600) - 2074943..2075701 (-) 759 WP_057682737.1 phosphatase PAP2 family protein -
  RO838_RS09605 (RO838_09605) comQ/pilQ 2077091..2079004 (-) 1914 WP_057682736.1 type IV pilus secretin PilQ Machinery gene
  RO838_RS09610 (RO838_09610) - 2079004..2079534 (-) 531 WP_057682735.1 pilus assembly protein PilP -
  RO838_RS09615 (RO838_09615) - 2079531..2080199 (-) 669 WP_004089909.1 type 4a pilus biogenesis protein PilO -
  RO838_RS09620 (RO838_09620) - 2080283..2080861 (-) 579 Protein_1879 PilN domain-containing protein -
  RO838_RS09625 (RO838_09625) pilM 2080861..2081919 (-) 1059 WP_004089911.1 type IV pilus biogenesis protein PilM Machinery gene

Sequence

Protein


Download         Length: 637 a.a.        Molecular weight: 68927.87 Da        Isoelectric Point: 8.4130

>NTDB_id=810198 RO838_RS09605 WP_057682736.1 2077091..2079004(-) (comQ/pilQ) [Xylella fastidiosa strain CFBP8478]
MIDLRDRMMTLFEVLGLRFVRRIASLRVCEIWVCIAFAWCCIPGTVSAENKQAIPVAKATNAPLSVSKIDFKRGDDGSGR
LILKFDGQGATPDLRTQGGTVLVDLGTAVLPTVLQRQINVVDFATPVQRIDAKPMGKGAQLVLSTKGAFESLAYQTGDEY
VVEIVPRKGEAAMGGAITPESVSKSAAKISAQGYSGRPVTFNFQDVPVRTVLQLIADESNLNIVASDTVQGNVTLRLINV
PWDQALDIVLRAKGLDKRRDEKVIWVAPQQELAKYEQEKEDARIAIENREGLITDYVQINYHSATVIFKALTEAKGMGGG
GNGTPNNNSDDAFLSPRGRLVADERTNTLMISDIPKKVAQMRTLIQHIDRPVDQVLIEGRIVIATDSFARDLGAKFGVGA
ASRFSDNTATIGSNVTTADSSTSATRGLNVDLGGPTNTTASVLPSLAYTLLGPKFNLDLELSALQQESRGEVISNPRIVT
ANQREGYIKQGKEIGYVTITGGVAGGQATPNVQFKEAVLELRVTPTITNDNRVFLNMTVKKDEIDQMITIANFGTVPTLN
KREINTAVLVDDGQTVVIGGVYEFSDRNSVSKVPFLGDVPFLGNLFKKRGKDKQKAELLIFVTPKVLRVANATAAVH

Nucleotide


Download         Length: 1914 bp        

>NTDB_id=810198 RO838_RS09605 WP_057682736.1 2077091..2079004(-) (comQ/pilQ) [Xylella fastidiosa strain CFBP8478]
ATGATTGATTTAAGGGATAGAATGATGACTTTATTTGAAGTCTTAGGCTTGCGTTTTGTTAGGCGTATAGCCTCGCTTCG
CGTATGTGAAATTTGGGTATGCATAGCTTTCGCTTGGTGTTGCATCCCAGGAACCGTATCGGCTGAAAACAAGCAAGCGA
TTCCAGTGGCTAAAGCTACCAATGCGCCACTAAGCGTTTCCAAAATCGATTTCAAACGTGGTGATGATGGCTCTGGCCGT
CTGATTTTGAAGTTTGATGGGCAGGGAGCCACTCCTGACCTGCGTACGCAGGGTGGCACCGTGCTGGTTGACCTGGGGAC
AGCTGTGTTGCCGACTGTCTTGCAACGCCAAATCAACGTTGTTGACTTTGCTACCCCAGTGCAGCGTATCGACGCTAAGC
CTATGGGTAAGGGTGCACAACTTGTGTTGAGCACGAAGGGAGCGTTTGAGTCGCTTGCTTACCAGACAGGGGATGAATAC
GTGGTTGAAATTGTGCCACGCAAGGGAGAGGCTGCCATGGGTGGGGCGATCACCCCAGAATCGGTCAGTAAGTCCGCAGC
GAAGATTTCCGCACAAGGGTACAGTGGTCGTCCAGTAACGTTTAACTTCCAAGACGTTCCAGTACGAACGGTTTTGCAGT
TGATCGCTGATGAGTCCAATCTCAATATTGTTGCTTCCGACACTGTGCAAGGTAATGTCACTCTACGTTTGATTAATGTG
CCATGGGATCAAGCGCTCGACATCGTTTTGCGTGCTAAAGGATTGGATAAGCGCCGTGATGAGAAAGTAATTTGGGTTGC
GCCGCAACAGGAGCTTGCTAAATACGAGCAAGAAAAAGAGGACGCGCGGATCGCGATCGAAAATCGTGAGGGGTTAATTA
CCGATTATGTCCAAATAAATTATCATTCGGCCACGGTCATTTTTAAGGCGCTGACAGAAGCCAAAGGTATGGGTGGGGGA
GGTAACGGTACACCTAATAATAATAGTGATGATGCTTTCTTATCGCCACGTGGTCGGCTTGTGGCTGATGAGCGCACTAA
TACGTTGATGATTAGTGATATTCCCAAGAAAGTCGCGCAAATGCGTACTCTCATCCAGCATATTGATCGTCCTGTGGACC
AAGTGTTGATTGAGGGCCGCATCGTGATCGCCACCGATAGCTTCGCGCGTGATTTGGGGGCCAAGTTTGGTGTTGGTGCT
GCTAGTCGTTTCAGCGATAACACTGCAACGATCGGTAGTAACGTCACTACTGCTGATAGCTCCACATCGGCTACGCGGGG
GCTTAATGTTGACTTGGGCGGTCCGACCAACACCACTGCTTCAGTTCTTCCGAGTTTAGCCTACACTTTGCTTGGACCTA
AATTTAATCTAGATCTTGAGCTTTCGGCATTGCAGCAGGAATCCCGTGGCGAGGTGATTTCAAACCCTCGTATTGTCACT
GCAAACCAGCGTGAGGGATATATCAAACAAGGTAAGGAAATTGGGTATGTCACGATCACTGGAGGAGTCGCTGGTGGTCA
AGCCACTCCGAATGTCCAATTTAAAGAGGCTGTTTTGGAGTTGCGTGTGACCCCAACGATCACCAATGACAACCGTGTGT
TTCTCAACATGACTGTCAAGAAGGACGAGATCGATCAAATGATTACGATCGCCAATTTCGGTACCGTGCCGACCTTGAAC
AAGCGTGAGATCAACACTGCCGTATTGGTTGATGATGGTCAAACTGTTGTTATCGGTGGTGTATATGAGTTTTCCGACCG
TAATAGTGTGAGTAAGGTTCCGTTCTTAGGGGATGTGCCTTTCCTTGGTAATTTGTTTAAGAAACGTGGTAAAGATAAAC
AAAAGGCCGAGCTTTTGATTTTCGTGACTCCTAAGGTGTTGCGTGTGGCTAATGCTACTGCTGCGGTGCATTGA

Domains

Predicted by InterProScan.

Bacterial type II and III secretion system protein (Secretin)

(463-628)

Bacterial type II/III secretion system short domain (Secretin_N)

(296-374)

Secretin and TonB N terminus short domain (STN)

(222-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ/pilQ Acinetobacter baylyi ADP1

40.067

93.25

0.374
  pilQ Acinetobacter baumannii strain A118

37.643

95.918

0.361
  pilQ Acinetobacter baumannii D1279779

37.643

95.918

0.361