Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   P6287_RS01670 Genome accession   NZ_CP121108
Coordinates   370908..371462 (+) Length   184 a.a.
NCBI ID   WP_061718369.1    Uniprot ID   A0A7Y7SMF5
Organism   Pantoea sp. X85     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 365908..376462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P6287_RS01655 (P6287_01655) - 366216..366566 (+) 351 WP_101763060.1 MmcQ/YjbR family DNA-binding protein -
  P6287_RS01660 (P6287_01660) - 366573..367637 (-) 1065 WP_277974402.1 NAD(P)-dependent alcohol dehydrogenase -
  P6287_RS01665 (P6287_01665) uvrA 367857..370685 (-) 2829 WP_110868157.1 excinuclease ABC subunit UvrA -
  P6287_RS01670 (P6287_01670) ssb 370908..371462 (+) 555 WP_061718369.1 single-stranded DNA-binding protein SSB1 Machinery gene
  P6287_RS01675 (P6287_01675) - 371564..372091 (-) 528 WP_192235999.1 isochorismatase family protein -
  P6287_RS01680 (P6287_01680) - 372213..373043 (+) 831 WP_277974403.1 AraC family transcriptional regulator -
  P6287_RS01685 (P6287_01685) - 373116..374069 (+) 954 WP_277974404.1 DMT family transporter -
  P6287_RS01690 (P6287_01690) - 375002..375397 (-) 396 WP_008109970.1 IS3 family transposase -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 19696.66 Da        Isoelectric Point: 5.2456

>NTDB_id=810153 P6287_RS01670 WP_061718369.1 370908..371462(+) (ssb) [Pantoea sp. X85]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKTTGENKEITEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQAGQEKYTTEVVVNVGGTMQMLGGRQQGANAGGAPAGGQGGGNNNGWGQPQQPQQQPQGGGNQFSGGAQ
QRPQQQSAPANNEPPMDFDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=810153 P6287_RS01670 WP_061718369.1 370908..371462(+) (ssb) [Pantoea sp. X85]
ATGGCCAGTCGTGGCGTAAACAAAGTGATTCTAGTCGGGAATCTGGGTCAGGATCCGGAAGTGCGCTACATGCCAAATGG
TGGCGCGGTAGCCAACATTACGCTGGCCACGTCAGAAAGCTGGCGCGATAAGACAACCGGTGAAAACAAAGAGATCACGG
AATGGCACCGCGTTGTGCTGTTCGGCAAGCTGGCGGAAGTGGCTGGCGAATACCTGCGTAAAGGTTCTCAGGTTTACATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAGGCCGGCCAGGAAAAATACACCACTGAAGTGGTGGTTAACGTTGG
CGGCACCATGCAGATGCTGGGCGGACGTCAGCAGGGCGCGAACGCAGGTGGCGCACCGGCGGGCGGCCAGGGCGGCGGCA
ATAACAACGGTTGGGGCCAGCCACAGCAGCCACAACAGCAGCCGCAGGGCGGTGGCAACCAGTTCAGCGGCGGTGCGCAG
CAGCGTCCACAGCAGCAGAGCGCGCCTGCTAACAACGAACCGCCAATGGATTTTGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y7SMF5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

70.899

100

0.728
  ssb Glaesserella parasuis strain SC1401

55.026

100

0.565
  ssb Neisseria meningitidis MC58

45.556

97.826

0.446
  ssb Neisseria gonorrhoeae MS11

45.556

97.826

0.446