Detailed information NTG0810094

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: QN339_RS10725
• Genome accession: NZ_CP135104
• Coordinates: 2123072..2124070 (+)
• Length: 332 a.a.
• NCBI ID: WP_000196633.1
• Uniprot ID: Q3K3X8
• Organism: Streptococcus agalactiae strain MA15
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2118072..2129070

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QN339_RS10710 (QN339_10695)	-	2118998..2120389 (+)	1392	WP_001079802.1	hypothetical protein	-
QN339_RS10715 (QN339_10700)	purB	2120414..2121712 (+)	1299	WP_000572887.1	adenylosuccinate lyase	-
QN339_RS10720 (QN339_10705)	comR	2121864..2122775 (+)	912	WP_000912100.1	helix-turn-helix domain-containing protein	Regulator
QN339_RS10725 (QN339_10710)	ruvB	2123072..2124070 (+)	999	WP_000196633.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
QN339_RS10730 (QN339_10715)	-	2124222..2124659 (+)	438	WP_000754813.1	low molecular weight protein-tyrosine-phosphatase	-
QN339_RS10735 (QN339_10720)	-	2124666..2125046 (+)	381	WP_000787700.1	membrane protein	-
QN339_RS10740 (QN339_10725)	-	2125043..2126821 (+)	1779	WP_001220909.1	acyltransferase family protein	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37573.90 Da
• Isoelectric Point: 4.5053

>NTDB_id=810094 QN339_RS10725 WP_000196633.1 2123072..2124070(+) (ruvB) [Streptococcus agalactiae strain MA15]
MTRFLDSDAMGDEELVERTLRPQYLREYIGQDKVKDQLKIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPAIEKSGDLVAILNDLEPGDVLFIDEIHRMPMAVEEVLYSAMEDFYIDIMIGAGETSRSVHLDLPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYEENDLTEIIERTADIFEMKITYEAASELARRSRGTPRIANRLLKRVRDYAQIMGDGLID
DNITDKALTMLDVDHEGLDYVDQKILRTMIEMYNGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIMRTRTGRVATDK
AYEHLGYQRFDK

Nucleotide

• Length: 999 bp

>NTDB_id=810094 QN339_RS10725 WP_000196633.1 2123072..2124070(+) (ruvB) [Streptococcus agalactiae strain MA15]
ATGACAAGATTTTTAGATAGTGATGCAATGGGTGACGAAGAATTGGTAGAACGTACACTTCGTCCGCAGTATTTAAGAGA
GTATATTGGACAAGATAAGGTTAAAGATCAGCTAAAAATATTTATTGAAGCTGCTAAATTGCGTGATGAGTCATTGGATC
ATGTGTTATTATTTGGCCCTCCTGGTTTAGGGAAAACAACCATGGCATTTGTAATTGCTAATGAGTTGGGTGTCAATCTC
AAACAAACATCAGGTCCCGCAATTGAAAAATCAGGGGATTTAGTAGCCATTTTAAATGATTTAGAACCAGGTGATGTTCT
TTTTATTGATGAAATTCATCGTATGCCGATGGCGGTTGAAGAGGTACTTTATAGTGCAATGGAAGACTTCTATATTGACA
TTATGATCGGTGCAGGAGAAACTAGTAGAAGTGTTCATCTAGATTTGCCGCCCTTTACCTTAATTGGTGCAACGACACGT
GCAGGTATGTTATCTAATCCCTTACGTGCTCGCTTTGGTATTACAGGGCATATGGAGTATTATGAAGAAAATGATTTGAC
AGAAATTATTGAGCGTACAGCAGACATTTTTGAAATGAAAATTACTTATGAAGCTGCTTCTGAATTAGCGCGTCGCAGTC
GTGGAACGCCACGTATCGCTAACCGTTTATTGAAACGTGTTCGAGATTATGCTCAAATCATGGGAGATGGTTTGATAGAT
GACAATATTACAGATAAAGCATTAACGATGTTAGATGTTGATCACGAGGGGCTTGATTACGTCGATCAAAAAATCTTAAG
AACCATGATTGAAATGTATAATGGAGGTCCTGTTGGTTTAGGAACTCTATCCGTTAATATTGCTGAAGAACGAGATACTG
TTGAAGACATGTACGAACCTTATTTAATTCAAAAAGGTTTTATTATGCGTACCCGTACCGGTCGTGTAGCTACGGATAAG
GCATATGAACATTTAGGTTATCAGCGATTTGATAAATAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

3D structure

• AlphaFold DB: Q3K3X8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	90.06	100	0.901
ruvB	Streptococcus pneumoniae R6	89.759	100	0.898
ruvB	Streptococcus pneumoniae D39	89.759	100	0.898
ruvB	Bacillus subtilis subsp. subtilis str. 168	59.819	99.699	0.596
ruvB	Helicobacter pylori 26695	53.074	93.072	0.494
ruvB	Synechocystis sp. PCC 6803	50.479	94.277	0.476