Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   QN329_RS00030 Genome accession   NZ_CP135103
Coordinates   5880..6545 (-) Length   221 a.a.
NCBI ID   WP_017647122.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain HU36/21     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 880..11545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN329_RS00025 (QN329_00025) hpf 5249..5803 (-) 555 WP_000599096.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  QN329_RS00030 (QN329_00030) comFC/cflB 5880..6545 (-) 666 WP_017647122.1 ComF family protein Machinery gene
  QN329_RS00035 (QN329_00035) - 6545..7621 (-) 1077 Protein_2 DEAD/DEAH box helicase -
  QN329_RS00040 (QN329_00040) - 7633..8439 (-) 807 Protein_3 IS5 family transposase -
  QN329_RS00045 (QN329_00045) - 8478..8696 (-) 219 Protein_4 DNA/RNA helicase -
  QN329_RS00050 (QN329_00050) - 8752..9396 (+) 645 WP_001108150.1 YigZ family protein -
  QN329_RS00055 (QN329_00055) cysK 9487..10413 (+) 927 WP_000036946.1 cysteine synthase A -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25573.78 Da        Isoelectric Point: 9.4466

>NTDB_id=809891 QN329_RS00030 WP_017647122.1 5880..6545(-) (comFC/cflB) [Streptococcus agalactiae strain HU36/21]
MTCLLCHEIDLSQLTFVEFILLKPKQNVICQTCKGSFEALGREMGCQTCCKQIPQKQCQDCIYWGKKGIEVNHFSLYRYN
EAMKKYFSLFKFQGDYLLKDVFTKEIKAALKRYKGYTIVPVPLSHEGYQNRQFNQVIAFLQSANIPYKNILSKKDGGKQS
ANNKEERLKQVQQFTLKNEAELRDNLLIVDDIYTTGATIAQIRKLLEEKGIKNIKSFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=809891 QN329_RS00030 WP_017647122.1 5880..6545(-) (comFC/cflB) [Streptococcus agalactiae strain HU36/21]
ATGACTTGTTTGTTATGTCATGAAATAGATTTGTCGCAATTAACTTTTGTGGAATTTATACTTCTAAAACCAAAGCAAAA
CGTAATTTGTCAAACGTGCAAGGGTAGTTTTGAAGCACTTGGTAGGGAGATGGGTTGCCAAACATGTTGCAAGCAAATCC
CCCAAAAACAATGTCAAGATTGTATTTATTGGGGTAAAAAAGGTATAGAGGTAAATCATTTTTCCCTTTATAGATACAAT
GAAGCAATGAAAAAATATTTTTCTCTTTTTAAATTTCAAGGGGATTATTTGTTGAAAGATGTTTTTACAAAAGAAATAAA
AGCTGCTCTAAAAAGGTATAAGGGCTACACTATAGTGCCAGTTCCCTTGAGTCATGAAGGATACCAAAATAGGCAATTTA
ATCAAGTGATTGCTTTTCTACAATCGGCAAATATACCTTATAAAAATATTCTTTCTAAAAAAGATGGTGGTAAGCAATCG
GCTAATAATAAAGAAGAAAGACTCAAACAAGTTCAGCAATTTACATTAAAAAATGAGGCTGAGTTAAGGGATAACCTTTT
AATTGTTGATGATATTTATACAACAGGCGCAACAATAGCACAAATCAGGAAACTATTAGAAGAAAAAGGTATAAAAAATA
TAAAAAGTTTTTCATTAGCACGCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

42.534

100

0.425
  comFC/cflB Streptococcus pneumoniae Rx1

42.081

100

0.421
  comFC/cflB Streptococcus pneumoniae D39

42.081

100

0.421
  comFC/cflB Streptococcus pneumoniae R6

42.081

100

0.421
  comFC/cflB Streptococcus mitis SK321

41.176

100

0.412
  comFC/cflB Streptococcus mitis NCTC 12261

41.176

100

0.412