Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   HT085_RS02710 Genome accession   NZ_AP023069
Coordinates   519988..520461 (+) Length   157 a.a.
NCBI ID   WP_025455782.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain TUM19854     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 514988..525461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT085_RS02685 (TUM19854C_05010) dnaB 515442..516848 (+) 1407 WP_003690896.1 replicative DNA helicase -
  HT085_RS02690 (TUM19854C_05020) pilH 517156..517821 (+) 666 WP_003690897.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  HT085_RS02695 (TUM19854C_05030) pilI 517853..518461 (+) 609 WP_003690898.1 type IV pilus modification protein PilV Machinery gene
  HT085_RS02700 (TUM19854C_05040) pilJ 518458..519399 (+) 942 WP_003690899.1 PilW family protein Machinery gene
  HT085_RS02705 (TUM19854C_05050) pilK 519378..519986 (+) 609 WP_003690900.1 pilus assembly protein Machinery gene
  HT085_RS02710 (TUM19854C_05060) pilL 519988..520461 (+) 474 WP_025455782.1 PilX family type IV pilin Machinery gene
  HT085_RS02715 (TUM19854C_05070) - 521073..521518 (-) 446 Protein_523 AzlC family ABC transporter permease -
  HT085_RS02720 (TUM19854C_05080) dut 521684..522136 (+) 453 WP_003690909.1 dUTP diphosphatase -
  HT085_RS02725 (TUM19854C_05090) dapC 522214..523401 (+) 1188 WP_003690911.1 succinyldiaminopimelate transaminase -
  HT085_RS02730 (TUM19854C_05110) yaaA 523557..524336 (+) 780 WP_003690913.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17506.38 Da        Isoelectric Point: 9.8238

>NTDB_id=80979 HT085_RS02710 WP_025455782.1 519988..520461(+) (pilL) [Neisseria gonorrhoeae strain TUM19854]
MEQKGFTLIEMMIVVTILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPQDNNQTIKSKLEIFVSGYKM
NPKIAKKYSVSVKFVDAEKPRVYRLVGVPNVGTGYTLSVWMNSVGDGYKCRDAASAKAYKEQLSGDGGCEALSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=80979 HT085_RS02710 WP_025455782.1 519988..520461(+) (pilL) [Neisseria gonorrhoeae strain TUM19854]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCACGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAGAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCAGGACAATAATCAGACCATCAAGAGCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTAAAGTTTGTCGATGCGGAAAAACCAAGGGTATACAGGTTGGTCGG
TGTTCCGAACGTGGGGACGGGTTATACCTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCG
CTTCGGCAAAGGCCTATAAAGAGCAGTTGTCCGGAGACGGTGGTTGTGAAGCCTTATCCAACCGTAAGAAATAG

Domains

Predicted by InterProScan.

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

89.172

100

0.892
  pilX Neisseria meningitidis 8013

85.987

100

0.86

Multiple sequence alignment