Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   HT085_RS02690 Genome accession   NZ_AP023069
Coordinates   517156..517821 (+) Length   221 a.a.
NCBI ID   WP_003690897.1    Uniprot ID   A0AB74EDV3
Organism   Neisseria gonorrhoeae strain TUM19854     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 512156..522821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT085_RS02665 (TUM19854C_04970) cysT 512279..513108 (-) 830 Protein_513 sulfate ABC transporter permease subunit CysT -
  HT085_RS02670 (TUM19854C_04980) - 513294..513626 (+) 333 WP_003687908.1 hypothetical protein -
  HT085_RS02675 (TUM19854C_04990) - 513956..514465 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  HT085_RS02680 (TUM19854C_05000) - 514697..515278 (-) 582 WP_003690895.1 superoxide dismutase -
  HT085_RS02685 (TUM19854C_05010) dnaB 515442..516848 (+) 1407 WP_003690896.1 replicative DNA helicase -
  HT085_RS02690 (TUM19854C_05020) pilH 517156..517821 (+) 666 WP_003690897.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  HT085_RS02695 (TUM19854C_05030) pilI 517853..518461 (+) 609 WP_003690898.1 type IV pilus modification protein PilV Machinery gene
  HT085_RS02700 (TUM19854C_05040) pilJ 518458..519399 (+) 942 WP_003690899.1 PilW family protein Machinery gene
  HT085_RS02705 (TUM19854C_05050) pilK 519378..519986 (+) 609 WP_003690900.1 pilus assembly protein Machinery gene
  HT085_RS02710 (TUM19854C_05060) pilL 519988..520461 (+) 474 WP_025455782.1 PilX family type IV pilin Machinery gene
  HT085_RS02715 (TUM19854C_05070) - 521073..521518 (-) 446 Protein_523 AzlC family ABC transporter permease -
  HT085_RS02720 (TUM19854C_05080) dut 521684..522136 (+) 453 WP_003690909.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24613.05 Da        Isoelectric Point: 9.4066

>NTDB_id=80975 HT085_RS02690 WP_003690897.1 517156..517821(+) (pilH) [Neisseria gonorrhoeae strain TUM19854]
MCTRKQQGFTLIELLIVIAIAAIMATIALPNMSGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPAQVKKDGTVD
NQCDLGKKEQGMLAFGDKNDNKAYDGDSADVFLRNVVLNDDIKDKRINYTFNHIAFGQTRSTADRVVWTFNQNGTFGYSS
DRNLKNNSKFVYSDGYIQIVLTDAKAVSAGEKKFRSAVVLIDSSGRVEVCPRNDRRAVCQH

Nucleotide


Download         Length: 666 bp        

>NTDB_id=80975 HT085_RS02690 WP_003690897.1 517156..517821(+) (pilH) [Neisseria gonorrhoeae strain TUM19854]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAATAGAGCTGCTCATCGTGATAGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGCCCAAGTTAAAAAAGACGGTACGGTCGAC
AACCAATGCGACTTGGGTAAGAAGGAACAGGGGATGTTGGCTTTCGGCGACAAAAACGACAATAAGGCATATGACGGTGA
TTCTGCGGATGTTTTTCTCCGTAACGTGGTATTGAATGATGATATCAAGGATAAGCGGATTAATTACACCTTCAATCATA
TCGCTTTCGGTCAAACACGGTCGACTGCCGATCGTGTTGTTTGGACTTTCAACCAAAACGGGACATTCGGCTATTCGTCC
GATCGGAATCTCAAGAATAATTCCAAATTTGTTTATTCTGACGGTTATATCCAAATCGTGTTGACAGATGCGAAGGCGGT
TTCTGCCGGTGAAAAGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGCCCTAGAAACG
ATAGGCGTGCCGTATGCCAACATTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

82.805

100

0.828

Multiple sequence alignment