Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   HT085_RS02705 Genome accession   NZ_AP023069
Coordinates   519378..519986 (+) Length   202 a.a.
NCBI ID   WP_003690900.1    Uniprot ID   A0AB74EBN2
Organism   Neisseria gonorrhoeae strain TUM19854     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 514378..524986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT085_RS02680 (TUM19854C_05000) - 514697..515278 (-) 582 WP_003690895.1 superoxide dismutase -
  HT085_RS02685 (TUM19854C_05010) dnaB 515442..516848 (+) 1407 WP_003690896.1 replicative DNA helicase -
  HT085_RS02690 (TUM19854C_05020) pilH 517156..517821 (+) 666 WP_003690897.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  HT085_RS02695 (TUM19854C_05030) pilI 517853..518461 (+) 609 WP_003690898.1 type IV pilus modification protein PilV Machinery gene
  HT085_RS02700 (TUM19854C_05040) pilJ 518458..519399 (+) 942 WP_003690899.1 PilW family protein Machinery gene
  HT085_RS02705 (TUM19854C_05050) pilK 519378..519986 (+) 609 WP_003690900.1 pilus assembly protein Machinery gene
  HT085_RS02710 (TUM19854C_05060) pilL 519988..520461 (+) 474 WP_025455782.1 PilX family type IV pilin Machinery gene
  HT085_RS02715 (TUM19854C_05070) - 521073..521518 (-) 446 Protein_523 AzlC family ABC transporter permease -
  HT085_RS02720 (TUM19854C_05080) dut 521684..522136 (+) 453 WP_003690909.1 dUTP diphosphatase -
  HT085_RS02725 (TUM19854C_05090) dapC 522214..523401 (+) 1188 WP_003690911.1 succinyldiaminopimelate transaminase -
  HT085_RS02730 (TUM19854C_05110) yaaA 523557..524336 (+) 780 WP_003690913.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22023.05 Da        Isoelectric Point: 7.5810

>NTDB_id=80978 HT085_RS02705 WP_003690900.1 519378..519986(+) (pilK) [Neisseria gonorrhoeae strain TUM19854]
MRKQNALTGIPTSEGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCENGLCTAVNVRTNDANEETFDNIVVKGKPTVEAVKRPCPAKSGKNSAGLCIDNKGMEYNKGVAGVSKMPR
YIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=80978 HT085_RS02705 WP_003690900.1 519378..519986(+) (pilK) [Neisseria gonorrhoeae strain TUM19854]
ATGCGCAAACAGAACGCTTTGACAGGAATCCCGACTTCTGAGGGACAGAGGGGGTTCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAACGGCCTGTGTACCGCAGTGAATGTACGGACAAATGATGCTAATGA
AGAGACTTTTGACAATATCGTGGTGAAAGGCAAGCCTACCGTTGAGGCCGTGAAGCGTCCTTGCCCTGCAAAGTCTGGCA
AAAATTCTGCCGGTCTGTGCATTGACAATAAAGGGATGGAATATAATAAAGGCGTGGCAGGCGTCAGCAAAATGCCGCGC
TATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAA
TACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterProScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-197)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

89.163

100

0.896

Multiple sequence alignment