Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | P3X84_RS11490 | Genome accession | NZ_CP120969 |
| Coordinates | 2484190..2484690 (-) | Length | 166 a.a. |
| NCBI ID | WP_277836281.1 | Uniprot ID | - |
| Organism | Pseudomonas putida strain AHSWHJXPP1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2471886..2519452 | 2484190..2484690 | within | 0 |
Gene organization within MGE regions
Location: 2471886..2519452
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P3X84_RS11390 (P3X84_11390) | - | 2471886..2472953 (-) | 1068 | WP_060538831.1 | phosphotransferase family protein | - |
| P3X84_RS11395 (P3X84_11395) | - | 2473137..2473454 (-) | 318 | WP_003251077.1 | SCP2 sterol-binding domain-containing protein | - |
| P3X84_RS11400 (P3X84_11400) | - | 2473511..2474221 (-) | 711 | WP_004577259.1 | histidine phosphatase family protein | - |
| P3X84_RS11405 (P3X84_11405) | sohB | 2474419..2475438 (+) | 1020 | WP_019750964.1 | protease SohB | - |
| P3X84_RS11415 (P3X84_11415) | - | 2475765..2476817 (-) | 1053 | WP_013973206.1 | tyrosine-type recombinase/integrase | - |
| P3X84_RS11420 (P3X84_11420) | - | 2476819..2477064 (-) | 246 | WP_277836270.1 | DUF4224 domain-containing protein | - |
| P3X84_RS11425 (P3X84_11425) | - | 2477104..2477583 (-) | 480 | WP_277836271.1 | hypothetical protein | - |
| P3X84_RS11430 (P3X84_11430) | - | 2477637..2478560 (-) | 924 | WP_277836272.1 | DHHA1 domain-containing protein | - |
| P3X84_RS11435 (P3X84_11435) | - | 2478849..2479241 (-) | 393 | WP_277836273.1 | phage protein NinX family protein | - |
| P3X84_RS11440 (P3X84_11440) | - | 2479238..2479594 (-) | 357 | WP_277836274.1 | hypothetical protein | - |
| P3X84_RS11445 (P3X84_11445) | - | 2479591..2479842 (-) | 252 | WP_024086938.1 | hypothetical protein | - |
| P3X84_RS11450 (P3X84_11450) | - | 2479839..2480489 (-) | 651 | WP_277836275.1 | hypothetical protein | - |
| P3X84_RS11455 (P3X84_11455) | - | 2480573..2480761 (-) | 189 | WP_043206566.1 | hypothetical protein | - |
| P3X84_RS11460 (P3X84_11460) | - | 2480758..2481243 (-) | 486 | WP_277836276.1 | hypothetical protein | - |
| P3X84_RS11465 (P3X84_11465) | - | 2481303..2481884 (+) | 582 | WP_277836277.1 | hypothetical protein | - |
| P3X84_RS11470 (P3X84_11470) | - | 2481976..2482593 (-) | 618 | WP_277836278.1 | hypothetical protein | - |
| P3X84_RS11475 (P3X84_11475) | yejK | 2482608..2483618 (-) | 1011 | WP_277836279.1 | nucleoid-associated protein YejK | - |
| P3X84_RS11480 (P3X84_11480) | - | 2483696..2483944 (-) | 249 | WP_277836280.1 | hypothetical protein | - |
| P3X84_RS11485 (P3X84_11485) | - | 2484026..2484187 (-) | 162 | WP_196183092.1 | hypothetical protein | - |
| P3X84_RS11490 (P3X84_11490) | ssb | 2484190..2484690 (-) | 501 | WP_277836281.1 | single-stranded DNA-binding protein | Machinery gene |
| P3X84_RS11495 (P3X84_11495) | - | 2484687..2485019 (-) | 333 | WP_277836282.1 | hypothetical protein | - |
| P3X84_RS11500 (P3X84_11500) | - | 2485037..2485420 (-) | 384 | WP_277836283.1 | helix-turn-helix transcriptional regulator | - |
| P3X84_RS11505 (P3X84_11505) | - | 2485780..2486070 (-) | 291 | WP_277836284.1 | hypothetical protein | - |
| P3X84_RS11510 (P3X84_11510) | - | 2486406..2486807 (-) | 402 | WP_277836285.1 | hypothetical protein | - |
| P3X84_RS11515 (P3X84_11515) | - | 2486861..2487607 (-) | 747 | WP_277836286.1 | S24 family peptidase | - |
| P3X84_RS11520 (P3X84_11520) | - | 2487646..2487885 (+) | 240 | WP_277836287.1 | hypothetical protein | - |
| P3X84_RS11525 (P3X84_11525) | - | 2488017..2488874 (+) | 858 | WP_277836288.1 | replication protein | - |
| P3X84_RS11530 (P3X84_11530) | - | 2488864..2489673 (+) | 810 | WP_277836289.1 | ATP-binding protein | - |
| P3X84_RS11535 (P3X84_11535) | - | 2489676..2489972 (+) | 297 | WP_277836290.1 | DUF1364 domain-containing protein | - |
| P3X84_RS11540 (P3X84_11540) | - | 2489969..2490397 (+) | 429 | WP_277836291.1 | VRR-NUC domain-containing protein | - |
| P3X84_RS11545 (P3X84_11545) | - | 2490394..2491692 (+) | 1299 | WP_277836292.1 | site-specific integrase | - |
| P3X84_RS11550 (P3X84_11550) | - | 2491689..2491979 (+) | 291 | WP_277836293.1 | hypothetical protein | - |
| P3X84_RS11555 (P3X84_11555) | - | 2491976..2492293 (+) | 318 | WP_277836294.1 | hypothetical protein | - |
| P3X84_RS11560 (P3X84_11560) | - | 2492304..2492990 (+) | 687 | WP_108191427.1 | hypothetical protein | - |
| P3X84_RS11565 (P3X84_11565) | - | 2493150..2493524 (+) | 375 | WP_085273440.1 | putative holin | - |
| P3X84_RS11570 (P3X84_11570) | - | 2493525..2493806 (+) | 282 | WP_277836295.1 | phage holin family protein | - |
| P3X84_RS11575 (P3X84_11575) | - | 2493806..2494024 (+) | 219 | WP_277836296.1 | hypothetical protein | - |
| P3X84_RS11580 (P3X84_11580) | - | 2494293..2494472 (+) | 180 | WP_277836297.1 | hypothetical protein | - |
| P3X84_RS11585 (P3X84_11585) | - | 2494568..2494849 (+) | 282 | WP_347276622.1 | HNH endonuclease signature motif containing protein | - |
| P3X84_RS11590 (P3X84_11590) | - | 2495102..2495587 (+) | 486 | WP_277836299.1 | phage terminase small subunit P27 family | - |
| P3X84_RS11595 (P3X84_11595) | - | 2495588..2497312 (+) | 1725 | WP_277836300.1 | terminase large subunit | - |
| P3X84_RS11600 (P3X84_11600) | - | 2497312..2498712 (+) | 1401 | WP_277836301.1 | phage portal protein | - |
| P3X84_RS11605 (P3X84_11605) | - | 2498727..2499614 (+) | 888 | WP_277836302.1 | head maturation protease, ClpP-related | - |
| P3X84_RS11610 (P3X84_11610) | - | 2499611..2500825 (+) | 1215 | WP_277836303.1 | phage major capsid protein | - |
| P3X84_RS11615 (P3X84_11615) | - | 2500867..2501112 (+) | 246 | WP_277836304.1 | hypothetical protein | - |
| P3X84_RS11620 (P3X84_11620) | - | 2501115..2501591 (+) | 477 | WP_277836305.1 | head-tail connector protein | - |
| P3X84_RS11625 (P3X84_11625) | - | 2501591..2501929 (+) | 339 | WP_277836306.1 | phage head closure protein | - |
| P3X84_RS11630 (P3X84_11630) | - | 2501922..2502407 (+) | 486 | WP_277836307.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| P3X84_RS11635 (P3X84_11635) | - | 2502404..2502772 (+) | 369 | WP_277836308.1 | DUF3168 domain-containing protein | - |
| P3X84_RS11640 (P3X84_11640) | - | 2502825..2503340 (+) | 516 | WP_277836309.1 | phage tail tube protein | - |
| P3X84_RS11645 (P3X84_11645) | - | 2503349..2503825 (+) | 477 | WP_277836310.1 | phage tail assembly chaperone family protein, TAC | - |
| P3X84_RS11650 (P3X84_11650) | - | 2504107..2504910 (+) | 804 | WP_277836311.1 | DUF6694 family lipoprotein | - |
| P3X84_RS11655 (P3X84_11655) | - | 2504954..2507362 (+) | 2409 | WP_277836312.1 | phage tail tape measure C-terminal domain-containing protein | - |
| P3X84_RS11660 (P3X84_11660) | - | 2507359..2507841 (+) | 483 | WP_277836313.1 | DUF1833 family protein | - |
| P3X84_RS11665 (P3X84_11665) | - | 2507854..2508207 (+) | 354 | WP_277836314.1 | hypothetical protein | - |
| P3X84_RS11670 (P3X84_11670) | - | 2508217..2508465 (-) | 249 | WP_277836315.1 | hypothetical protein | - |
| P3X84_RS11675 (P3X84_11675) | - | 2508616..2509035 (+) | 420 | WP_277836316.1 | hypothetical protein | - |
| P3X84_RS11680 (P3X84_11680) | - | 2509007..2512105 (+) | 3099 | WP_277836317.1 | host specificity factor TipJ family phage tail protein | - |
| P3X84_RS11685 (P3X84_11685) | - | 2512117..2512599 (+) | 483 | WP_277836318.1 | hypothetical protein | - |
| P3X84_RS11690 (P3X84_11690) | - | 2512642..2514579 (+) | 1938 | WP_277836319.1 | hypothetical protein | - |
| P3X84_RS11695 (P3X84_11695) | - | 2514605..2515414 (+) | 810 | WP_277836320.1 | hypothetical protein | - |
| P3X84_RS11700 (P3X84_11700) | - | 2515512..2516000 (+) | 489 | WP_277836321.1 | glycoside hydrolase family 104 protein | - |
| P3X84_RS11705 (P3X84_11705) | - | 2515997..2516521 (+) | 525 | WP_277836322.1 | DUF2514 domain-containing protein | - |
| P3X84_RS11710 (P3X84_11710) | - | 2516508..2516903 (-) | 396 | WP_277836323.1 | hypothetical protein | - |
| P3X84_RS11715 (P3X84_11715) | - | 2516935..2517702 (-) | 768 | WP_277836324.1 | hypothetical protein | - |
| P3X84_RS11720 (P3X84_11720) | - | 2518212..2518523 (-) | 312 | WP_277836325.1 | hypothetical protein | - |
| P3X84_RS11725 (P3X84_11725) | - | 2518956..2519132 (-) | 177 | WP_004577257.1 | hypothetical protein | - |
| P3X84_RS11730 (P3X84_11730) | - | 2519129..2519452 (-) | 324 | WP_004577256.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 18624.81 Da Isoelectric Point: 7.8775
>NTDB_id=809700 P3X84_RS11490 WP_277836281.1 2484190..2484690(-) (ssb) [Pseudomonas putida strain AHSWHJXPP1]
MSRGVNKVILVGTCGQDPDVRYLPNGNAVTNLSLATSEQWTDKHSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGSRPQGQQPGQAPDRQPRQQQRPARPQQNQQAAPRDHDSFDDDIPFAPL
PFLAGA
MSRGVNKVILVGTCGQDPDVRYLPNGNAVTNLSLATSEQWTDKHSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGSRPQGQQPGQAPDRQPRQQQRPARPQQNQQAAPRDHDSFDDDIPFAPL
PFLAGA
Nucleotide
Download Length: 501 bp
>NTDB_id=809700 P3X84_RS11490 WP_277836281.1 2484190..2484690(-) (ssb) [Pseudomonas putida strain AHSWHJXPP1]
ATGAGCCGCGGGGTAAACAAGGTCATCCTGGTCGGCACCTGCGGTCAGGACCCGGACGTGCGCTACCTGCCCAACGGCAA
CGCGGTCACCAACCTCAGCCTGGCCACCAGCGAGCAGTGGACGGACAAGCATTCAGGCCAGAAGGTCGAGCGCACCGAGT
GGCACCGCGTCTCGCTGTTCGGCAAGGTTGCGGAGATTGCCGGTGAGTACCTGCGCAAGGGCTCCCAGTGCTACATCGAG
GGCAAGCTGCAGACTCGCGAGTGGGAGAAGGACGGCATCAAGCGCTACACCACTGAAATCATCGTCGACATCAACGGCAC
CATGCAGCTGCTCGGCAGCCGGCCACAGGGTCAGCAGCCTGGGCAAGCGCCAGATCGCCAGCCCCGCCAACAACAGCGCC
CGGCCCGCCCGCAGCAGAACCAGCAGGCCGCGCCGCGGGATCACGACAGCTTCGACGACGACATACCCTTCGCGCCCCTT
CCCTTCCTCGCCGGTGCGTAG
ATGAGCCGCGGGGTAAACAAGGTCATCCTGGTCGGCACCTGCGGTCAGGACCCGGACGTGCGCTACCTGCCCAACGGCAA
CGCGGTCACCAACCTCAGCCTGGCCACCAGCGAGCAGTGGACGGACAAGCATTCAGGCCAGAAGGTCGAGCGCACCGAGT
GGCACCGCGTCTCGCTGTTCGGCAAGGTTGCGGAGATTGCCGGTGAGTACCTGCGCAAGGGCTCCCAGTGCTACATCGAG
GGCAAGCTGCAGACTCGCGAGTGGGAGAAGGACGGCATCAAGCGCTACACCACTGAAATCATCGTCGACATCAACGGCAC
CATGCAGCTGCTCGGCAGCCGGCCACAGGGTCAGCAGCCTGGGCAAGCGCCAGATCGCCAGCCCCGCCAACAACAGCGCC
CGGCCCGCCCGCAGCAGAACCAGCAGGCCGCGCCGCGGGATCACGACAGCTTCGACGACGACATACCCTTCGCGCCCCTT
CCCTTCCTCGCCGGTGCGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
54.286 |
100 |
0.572 |
| ssb | Glaesserella parasuis strain SC1401 |
46.409 |
100 |
0.506 |
| ssb | Neisseria meningitidis MC58 |
43.75 |
100 |
0.464 |
| ssb | Neisseria gonorrhoeae MS11 |
43.182 |
100 |
0.458 |