Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RPM46_RS31740 Genome accession   NZ_CP135096
Coordinates   6858017..6858514 (-) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain Paer3554     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6853017..6863514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPM46_RS31720 (RPM46_31720) pchD 6853801..6855444 (+) 1644 WP_019371421.1 pyochelin biosynthesis salicyl-AMP ligase PchD -
  RPM46_RS31725 (RPM46_31725) pchC 6855441..6856196 (+) 756 WP_003114687.1 pyochelin biosynthesis editing thioesterase PchC -
  RPM46_RS31730 (RPM46_31730) pchB 6856196..6856501 (+) 306 WP_003106950.1 isochorismate lyase PchB -
  RPM46_RS31735 (RPM46_31735) pchA 6856498..6857928 (+) 1431 WP_033943565.1 isochorismate synthase PchA -
  RPM46_RS31740 (RPM46_31740) ssb 6858017..6858514 (-) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  RPM46_RS31745 (RPM46_31745) - 6858531..6859919 (-) 1389 WP_003103910.1 MFS transporter -
  RPM46_RS31750 (RPM46_31750) uvrA 6860133..6862970 (+) 2838 WP_003093663.1 excinuclease ABC subunit UvrA Machinery gene
  RPM46_RS31755 (RPM46_31755) bfr 6863042..6863506 (-) 465 WP_016852423.1 bacterioferritin -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=809476 RPM46_RS31740 WP_003114685.1 6858017..6858514(-) (ssb) [Pseudomonas aeruginosa strain Paer3554]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=809476 RPM46_RS31740 WP_003114685.1 6858017..6858514(-) (ssb) [Pseudomonas aeruginosa strain Paer3554]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515