Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   OO978_RS09950 Genome accession   NZ_AP026783
Coordinates   2058919..2059929 (+) Length   336 a.a.
NCBI ID   WP_000568519.1    Uniprot ID   Q32HA1
Organism   Escherichia coli strain IPCEC31     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2053919..2064929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO978_RS09920 (IPCEC31_19370) nudB 2055643..2056095 (+) 453 WP_001443602.1 dihydroneopterin triphosphate diphosphatase -
  OO978_RS09925 (IPCEC31_19380) yebC 2056124..2056864 (+) 741 WP_000907248.1 YebC/PmpR family DNA-binding transcriptional regulator -
  OO978_RS09930 (IPCEC31_19390) ruvC 2056899..2057420 (+) 522 WP_001295503.1 crossover junction endodeoxyribonuclease RuvC -
  OO978_RS09935 (IPCEC31_19400) yebB 2057422..2058024 (-) 603 WP_001024930.1 YebB family permuted papain-like enzyme -
  OO978_RS09940 yobI 2058095..2058160 (+) 66 WP_001386853.1 stress response small protein YobI -
  OO978_RS09945 (IPCEC31_19410) ruvA 2058299..2058910 (+) 612 WP_000580323.1 Holliday junction branch migration protein RuvA -
  OO978_RS09950 (IPCEC31_19420) ruvB 2058919..2059929 (+) 1011 WP_000568519.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  OO978_RS09955 (IPCEC31_19430) znuB 2060076..2060861 (-) 786 WP_000571479.1 zinc ABC transporter permease subunit ZnuB -
  OO978_RS09960 (IPCEC31_19440) znuC 2060858..2061613 (-) 756 WP_000202996.1 zinc ABC transporter ATP-binding protein ZnuC -
  OO978_RS09965 (IPCEC31_19450) znuA 2061692..2062624 (+) 933 WP_001342995.1 zinc ABC transporter substrate-binding protein ZnuA -
  OO978_RS09970 (IPCEC31_19460) mepM 2062640..2063962 (+) 1323 WP_001184045.1 murein DD-endopeptidase MepM -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37173.77 Da        Isoelectric Point: 4.7818

>NTDB_id=80942 OO978_RS09950 WP_000568519.1 2058919..2059929(+) (ruvB) [Escherichia coli strain IPCEC31]
MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG
VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG
TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA
TTRAWNHFGITPPEMP

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=80942 OO978_RS09950 WP_000568519.1 2058919..2059929(+) (ruvB) [Escherichia coli strain IPCEC31]
ATGATTGAAGCAGACCGTCTGATTTCTGCCGGTACCACTTTGCCGGAAGATGTGGCAGATCGCGCCATTCGCCCTAAATT
ACTGGAAGAGTATGTTGGTCAGCCGCAGGTTCGTTCACAGATGGAGATTTTCATCAAAGCAGCGAAACTGCGCGGCGATG
CCCTCGATCATCTGTTGATTTTCGGTCCTCCGGGGTTGGGTAAAACTACGCTTGCCAACATCGTCGCCAATGAAATGGGC
GTTAATTTACGCACGACTTCTGGTCCGGTGCTGGAAAAGGCGGGCGATCTGGCAGCGATGCTCACTAACCTTGAACCGCA
TGACGTGTTGTTTATTGATGAGATCCACCGTCTTTCGCCAGTGGTGGAAGAGGTGTTGTATCCGGCAATGGAAGACTACC
AACTGGATATCATGATTGGTGAAGGTCCGGCGGCACGCTCCATTAAAATTGATTTGCCGCCGTTTACCCTGATTGGTGCA
ACCACGCGCGCAGGTTCGCTGACATCACCGTTGCGCGATCGTTTTGGTATTGTGCAGCGTCTGGAGTTTTATCAGGTGCC
GGATCTGCAATATATCGTCAGTCGCAGCGCACGCTTTATGGGGCTTGAGATGAGTGATGACGGCGCGCTGGAAGTTGCTC
GTCGAGCTCGCGGTACGCCGCGCATTGCCAACCGTCTGCTGCGTCGAGTGCGTGATTTCGCCGAAGTGAAGCACGATGGC
ACCATCTCGGCAGATATCGCTGCTCAGGCGTTGGATATGTTGAATGTCGATGCTGAAGGTTTCGATTATATGGACCGCAA
GTTATTGCTGGCGGTAATCGATAAGTTCTTTGGTGGGCCGGTAGGTCTGGATAACCTTGCGGCAGCCATTGGCGAAGAAC
GTGAAACCATTGAGGATGTGCTGGAACCTTATTTGATTCAGCAAGGCTTTTTGCAGCGTACACCGCGTGGGCGTATGGCG
ACGACGCGGGCGTGGAATCACTTTGGCATAACGCCGCCAGAAATGCCGTAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)

RuvB AAA lid domain (AAA_lid_4)

(184-257)

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HA1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

60.486

97.917

0.592
  ruvB Streptococcus pneumoniae TIGR4

58.934

94.94

0.56
  ruvB Streptococcus pneumoniae R6

58.934

94.94

0.56
  ruvB Streptococcus pneumoniae D39

58.934

94.94

0.56
  ruvB Synechocystis sp. PCC 6803

53.251

96.131

0.512
  ruvB Helicobacter pylori 26695

52.038

94.94

0.494

Multiple sequence alignment