Detailed information NTG0809402

Bioinformatically predicted

Overview

• Name: comGF
• Type: Machinery gene
• Locus tag: LLNCDO1820_RS11205
• Genome accession: NZ_CP120927
• Coordinates: 2186039..2186485 (-)
• Length: 148 a.a.
• NCBI ID: WP_031296844.1
• Uniprot ID: A0AAC9R3D6
• Organism: Lactococcus lactis subsp. lactis strain NCDO1820
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2181039..2191485

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LLNCDO1820_RS11170 (LLNCDO1820_11165)	-	2181156..2181533 (-)	378	WP_003129983.1	pyridoxamine 5'-phosphate oxidase family protein	-
LLNCDO1820_RS11175 (LLNCDO1820_11170)	-	2181738..2182604 (+)	867	WP_010906309.1	RluA family pseudouridine synthase	-
LLNCDO1820_RS11180 (LLNCDO1820_11175)	-	2182643..2183452 (-)	810	WP_010906310.1	metal ABC transporter permease	-
LLNCDO1820_RS11185 (LLNCDO1820_11180)	-	2183445..2184182 (-)	738	WP_010906311.1	metal ABC transporter ATP-binding protein	-
LLNCDO1820_RS11190 (LLNCDO1820_11185)	-	2184359..2185201 (-)	843	WP_010906312.1	metal ABC transporter substrate-binding protein	-
LLNCDO1820_RS11195 (LLNCDO1820_11190)	-	2185198..2185635 (-)	438	WP_010906313.1	zinc-dependent MarR family transcriptional regulator	-
LLNCDO1820_RS11200 (LLNCDO1820_11195)	comGG	2185716..2186000 (-)	285	WP_010906314.1	competence type IV pilus minor pilin ComGG	Machinery gene
LLNCDO1820_RS11205 (LLNCDO1820_11200)	comGF	2186039..2186485 (-)	447	WP_031296844.1	competence type IV pilus minor pilin ComGF	Machinery gene
LLNCDO1820_RS11210 (LLNCDO1820_11205)	comGE	2186448..2186744 (-)	297	WP_010906316.1	competence type IV pilus minor pilin ComGE	Machinery gene
LLNCDO1820_RS11215 (LLNCDO1820_11210)	comGD	2186716..2187114 (-)	399	WP_021214886.1	competence type IV pilus minor pilin ComGD	Machinery gene
LLNCDO1820_RS11220 (LLNCDO1820_11215)	comGC	2187107..2187490 (-)	384	WP_010906318.1	competence type IV pilus major pilin ComGC	Machinery gene
LLNCDO1820_RS11225 (LLNCDO1820_11220)	comGB	2187504..2188577 (-)	1074	WP_010906319.1	competence type IV pilus assembly protein ComGB	Machinery gene
LLNCDO1820_RS11230 (LLNCDO1820_11225)	comGA	2188471..2189409 (-)	939	WP_010906320.1	competence type IV pilus ATPase ComGA	Machinery gene

Sequence

Protein

• Length: 148 a.a.
• Molecular weight: 17083.85 Da
• Isoelectric Point: 8.6780

>NTDB_id=809402 LLNCDO1820_RS11205 WP_031296844.1 2186039..2186485(-) (comGF) [Lactococcus lactis subsp. lactis strain NCDO1820]
MERKLCDLNFKVKAFTLLECLVALLAISGSALVISGLTKMLKEQVAISQSDSIKDWQIFCQQMRFELSGTKLDRVEQNFL
YVTKDKKLRFGFMSDDFRKTDDKGQGYQPMLYDIKAAKIQATKNLITIRIDFNQGGERTFIYQFPEDT

Nucleotide

• Length: 447 bp

>NTDB_id=809402 LLNCDO1820_RS11205 WP_031296844.1 2186039..2186485(-) (comGF) [Lactococcus lactis subsp. lactis strain NCDO1820]
ATGGAAAGGAAATTATGCGACTTGAACTTCAAAGTTAAAGCATTTACCTTGTTGGAGTGTTTGGTGGCACTTCTTGCAAT
TTCTGGTTCAGCCCTTGTCATCTCAGGTTTAACAAAGATGTTGAAAGAACAAGTGGCGATTAGTCAAAGTGATAGCATAA
AAGATTGGCAAATTTTCTGTCAGCAAATGCGTTTTGAACTCTCAGGAACAAAATTAGATAGGGTAGAACAGAATTTTCTG
TATGTAACTAAAGATAAAAAACTAAGGTTTGGTTTTATGAGTGATGATTTCCGGAAGACTGATGACAAAGGTCAGGGTTA
TCAGCCAATGCTTTATGATATAAAAGCGGCTAAGATTCAAGCTACTAAAAATTTAATAACCATAAGAATTGATTTTAATC
AAGGAGGTGAAAGAACATTTATTTATCAATTTCCAGAAGATACGTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (48-137)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGF	Lactococcus lactis subsp. cremoris KW2	75.54	93.919	0.709
comYF	Streptococcus mutans UA140	47.518	95.27	0.453
comYF	Streptococcus mutans UA159	46.809	95.27	0.446
comGF/cglF	Streptococcus mitis SK321	43.066	92.568	0.399
comGF/cglF	Streptococcus pneumoniae Rx1	40.426	95.27	0.385
comGF/cglF	Streptococcus pneumoniae D39	40.426	95.27	0.385
comGF/cglF	Streptococcus pneumoniae R6	40.426	95.27	0.385
comGF/cglF	Streptococcus pneumoniae TIGR4	40.426	95.27	0.385
comGF/cglF	Streptococcus mitis NCTC 12261	41.606	92.568	0.385